Lactobacillus intestinalis: KBW87_03545
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Entry
KBW87_03545 CDS
T08339
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
liq
Lactobacillus intestinalis
Pathway
liq03030
DNA replication
liq03430
Mismatch repair
liq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KBW87_03545
03430 Mismatch repair
KBW87_03545
03440 Homologous recombination
KBW87_03545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
liq03032
]
KBW87_03545
03400 DNA repair and recombination proteins [BR:
liq03400
]
KBW87_03545
Enzymes [BR:
liq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KBW87_03545
DNA replication proteins [BR:
liq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KBW87_03545
DNA repair and recombination proteins [BR:
liq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KBW87_03545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
DNA_pol3_a_NI
RNase_H_2
HHH_3
Auto_anti-p27
T2SSK
DEDDh_C
YhfC
Zn_ribbon_8
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
UTW40959
LinkDB
All DBs
Position
760130..764446
Genome browser
AA seq
1438 aa
AA seq
DB search
MTNKNELFLKLLKQVHFPDQFEDNDLLQKGKIENVDVYAKEHRWDIHVLFDSPLKFDTYN
ALNTAINESFASFVNTRFFVGTKDGSDQYLPDYWQYAVKNSNVLASATREFLAGQVPRKE
DGRWIIPVDNSVIDNLIEQKALDDLSEEMRKYGFFNLKFLTEFDEQSSQNNLESLQQLQE
EHDKNMQEVYQSIPEKPKKSKPAPSKYSTKKTHYGNTKVDENAEITQIHDLEDGTRNVVI
EGNIFNIESRELKSGSVIFTGEITDYTDSIGFKKFVSNKEQIASLSAIKPGTWAKMQGSA
ATDQWQNDVVFNINAFETVEHEGRQEKYEGDQKRVELHLHTNMSQLDATNTATDFVNAAK
KFGQKAIAVTDHGDVQSFPDAYSAGKKTGLKILYGVEANMIDDHALLVLNPAEMKYEDKE
FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSEQTINLTSITDEMV
SAADDEDVVIKQFKDFYGDDPLCGHNVQFDVGFVNAALRKSGYEEITQPVVDTLEVSRLL
HPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNARFHEDDLGKMNDYA
EHGQVYKRARPSHMTILAKNQAGLKNMYKLVSIASTTNFYRIPRTPKSDLRRLHDNLLYG
SGCWQGDVFIAMMQKGYDEARKKAKFYDFLEVQPPANYQQLIEDGLIKDEAELEEILTNI
YKLGKELNKPVVATGDAHYVDPHDAIYRTILISAQRSNPNRNKPQPDLHFYTTQEMLDAF
SFLGEEAAKEIVITNTNKIADSLEEIAPIKDGLYPPHIDNADQEMKDLTYNKAYELYGKP
LPKIVKDRIEMELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGIT
EVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKDCPKCGTPLVKDGQDIPFATFLGFHG
DKVPDIDLNFSGDYQPVAHNFIRVMFGPNNSYRAGTIATVADKTAYGYAKHYDEERDLKL
RNAELDRLASGVSGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDVNAAWLTTHFDFH
SIHDNILKFDILGHDDPTMIRMLQDLSGIDPLSIPPDDPGVMSLFSSPEILGVTPEQIQS
KTGTLGVPEFGTKFVRGMLEETKPNTFSELLQISGLSHGTDVWLGNAEELINNGTCKLKN
VIGCRDNIMMDLIHWGVKPEVAFSTMESVRHGRGISDEDMAVLKKNKNIPDWYIPSCLKI
KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKK
IQDKGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESDALNFKIIDKNTILAPFNAV
PGLGDNAAKQIVAARAEQKFLSKEDLAKRGKVSQTIMDYFENNGVLEGMPDQNQLSLF
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
gtgactaataaaaacgagctattcttaaaacttttaaagcaagttcattttcctgatcaa
tttgaagataatgatttacttcaaaaaggaaaaattgagaacgtggatgtatacgctaaa
gaacataggtgggatatccacgttctttttgattctcctttaaagtttgatacatataat
gcgttaaatacagcaataaacgaaagttttgcttcttttgttaatacccgtttctttgta
ggaacaaaggatggatcagatcaatatttgcccgattattggcaatatgctgtcaaaaat
tcaaatgttttggcgtcagctacgcgagaatttttagctggtcaggttcctcgtaaagaa
gatggtcgatggataatcccagtcgacaattcagtgattgacaatttaattgagcaaaaa
gctttagatgatttatcagaagaaatgcgtaagtatggcttttttaacttgaagtttctt
actgaatttgatgaacaaagttctcaaaacaatctagagagtttgcaacaattacaagaa
gagcatgataaaaacatgcaagaagtttatcaatctattcctgaaaagccgaaaaaaagc
aaacccgctccatctaaatattcaactaagaaaacacattatggaaatacaaaagttgat
gaaaatgcagaaattacccaaatccatgatctggaagatggaactcgaaatgtcgtaatt
gaaggaaatatttttaatattgaaagtcgagaattgaagtcaggttcagtgatttttact
ggggaaattacggattatacggactcaattggatttaaaaaatttgtttcaaataaagag
caaattgcaagtttatctgctattaagccaggaacatgggctaaaatgcaaggatcagca
gctacagatcaatggcaaaatgatgtagtgtttaatattaatgcttttgaaactgtggaa
catgaagggcgacaagaaaaatatgaaggtgatcaaaagcgggttgaacttcaccttcat
accaacatgagccaattagatgcaactaatactgctaccgattttgtaaatgctgctaaa
aagtttggtcaaaaagctattgcggttactgatcatggggatgttcaatctttccctgat
gcttatagtgctggtaagaaaacaggactaaagattttgtatggtgttgaagctaatatg
attgatgatcatgctttattagttttgaatccagctgaaatgaaatatgaagataaagaa
tttgtaatttttgacgttgaaactacgggcttatcttctgtttacgatactattattgaa
attggtgccgtaaaaatgaagaatggagaggttatcgatcgatttgacaagtttattaat
cctcaccatcctttgagtgaacaaactattaatttaacttctattacagatgagatggta
agtgctgctgatgatgaagatgttgtgatcaaacagttcaaagatttttatggtgatgat
cctctttgcggacacaatgttcaatttgatgttggttttgtcaatgctgctttaagaaaa
agtggttatgaagaaataactcaacctgtggttgatacacttgaagtttcacgtttactt
cacccagaacaaactagacatactctggattcattagctaagaaatataatgttgttttg
gaacatcaccaccgagcaaatcaagacgctgaagcgactggatatttaatgtttaaactt
ctggatgcttttaatgcgcgttttcatgaagatgatttaggtaaaatgaatgattatgct
gagcatgggcaggtttataaacgagcacgtccatctcacatgactattttggctaaaaat
caagctggattgaaaaatatgtataaacttgtttctattgcaagtactactaatttttat
cgaattcctagaactcctaagtcagatcttagaagacttcatgataatcttttatatggt
tctggttgttggcagggcgatgtatttattgctatgatgcaaaaagggtatgatgaagca
cgtaagaaagccaagttttatgatttcttagaggtgcagcctccagcaaattatcaacaa
ttaattgaagacggtttaattaaagatgaagctgaattagaagaaattctgactaatatt
tataaattaggaaaagaattaaataagccagttgttgctactggcgatgctcattatgtg
gatcctcatgatgcaatctatagaacaattttgatttcagctcaaagaagtaatccaaat
cggaacaaaccgcaaccagatttacatttttatacaactcaagaaatgcttgatgcattt
agctttttaggggaagaagcggctaaggaaattgttattactaacacaaataagattgct
gattctctagaagaaattgccccaattaaagatggtctttatcctccacatattgataat
gccgatcaagaaatgaaagatttgacttacaataaggcttatgaactttatggaaaacct
cttcctaaaattgttaaagatagaattgaaatggaattaaactcaatcatttcaaatggc
tatgcggttatttacttaatttctcagcgtctagtagctaaatcaaataaagatggatat
ttggttggttcgcgtggatccgtaggttcgagtttggttgctactatgtctggaattact
gaggttaatccactcgcgccgcattatcggtgtcctaattgtaaatattctaagtttttt
gaaaatggagaatatggttcaggatatgacttgcctgataaagattgtccaaaatgtggt
actccgcttgtaaaagatggtcaggatattccatttgctactttcttgggattccacggt
gataaggttcctgatattgatttaaatttctcaggagactaccaaccagttgcacataac
tttattcgagttatgtttggacccaataattcatatcgtgcgggtaccattgcgacagtt
gcagataaaactgcttatggttatgctaagcattatgatgaagaacgtgatttaaagctg
cggaatgcagaattagatcggttagcatctggggtttctggagtaaaaaggacaacagga
caacaccctgcaggaattgtggtggttcctaacgacatggatatttatgactttactccg
gttcagtacccagcggatgatgttaatgcagcatggttaacgactcactttgatttccat
tctattcacgataatattttaaaatttgatattttagggcatgatgatccaacaatgatc
agaatgttgcaagatttgtcaggaattgatcctttgtctattccaccagatgacccagga
gttatgtcattattttcaagtcctgaaattttaggagtgacaccagaacaaattcaatct
aaaactggtaccttaggtgtgccagaatttggaacgaaatttgttcgagggatgcttgaa
gaaactaaaccaaatactttttctgaacttttacaaatttccggtttatctcatgggact
gatgtatggctagggaatgcggaagaactaattaacaatggaacttgtaaattgaagaat
gtaattggttgtcgtgataacatcatgatggaccttatccactggggcgttaaaccagaa
gtagccttttcgacgatggaatcagttcgtcatgggcgcggtatcagtgatgaagatatg
gcagttttgaagaaaaataaaaatatcccagattggtacattccatcttgtttaaagatt
aaatatatgttccctaaagcacacgcaacagcatatattttaatggcacttcgaattgca
tggtttaaagtttattacccagaaatttactacacggcttatttctcagttcgtgctgat
ctatttgatttagtagcaatgagtcatggtaaaaacactgtgaaagccgcaatgaagaaa
attcaagataagggaaatgatgcttctgctaaggataagagcttattaactgtgcttgag
attgctaatgaatgtttagagcgtggaattaaaatcaagatggttgatgttaatgaatca
gatgcgcttaactttaagattattgataaaaataccatcttagctccatttaatgcggtt
cccggtcttggtgataatgcggctaagcaaattgtagcagctcgtgcagaacaaaaattc
ttatcaaaagaagatttggcaaaacgtggtaaagtatctcaaactattatggattacttt
gaaaataatggcgttttggaagggatgcccgatcaaaatcaattatctctattctaa
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integrated database retrieval system
