Lactobacillus intestinalis: KBW87_03630
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Entry
KBW87_03630 CDS
T08339
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
liq
Lactobacillus intestinalis
Pathway
liq03410
Base excision repair
liq03430
Mismatch repair
liq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KBW87_03630 (recJ)
03430 Mismatch repair
KBW87_03630 (recJ)
03440 Homologous recombination
KBW87_03630 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liq03400
]
KBW87_03630 (recJ)
DNA repair and recombination proteins [BR:
liq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KBW87_03630 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KBW87_03630 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KBW87_03630 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
ssDNA-exonuc_C
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UTW40974
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All DBs
Position
781684..783945
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AA seq
753 aa
AA seq
DB search
MKWKQRNAEPLDPNLIQEYQLSPIAAKLFSLRGINTAEKLDFWFNSSEEDLADPSLMHDL
DKAVERINQAIDRGEKITIYGDYDADGITSTAIMVETLGILGADVHYFIPNRFKEGYGPN
LDNYKKIVADGTKLIITVDNGVTGVDEVAYAKTEGVDTIITDHHTFQEKVPDSYALVHCN
YPGQTYPFDDYCGAGVAYTLCRKLMEDPLPELLDLVMIGTIGDMVKVSGEGHIIVKRGLE
IFNRTDRPGLRALVKNAGLKLGNLDETDIGFNISPRLNATGRLDNASLAVELLLADDEFE
AKQLADKIEELNNKRRELTQEVYKSCLNQVKMNNWQRSNTLVLYDPDFHEGVLGLVANKI
ATTLHKPTLVLTKNDQGEVKGSGRSGKNFNLFNALNPLKKLFTKFGGHDFACGLSMTEDK
IPELREKLESGFHVEQESAEEYDFELPLKDLSLDTLEQINQAGPFGTDNPKPVFSVSDFQ
IKNFIRMGQEKNHIRFNAVKDDGSLTVVGFNKDYLDNDLLPFISKVFVELNRNTYKNKVS
LQAIMKGVDFAAPKLAVPAPIIDLRNESYVMGFADRYLLFNEKNIPAVENLGIDPEKITL
VKDYDQADEVVVLLDTPKNKIELDQALQNNYQQLYLRFLLDQLPVEKLPAKSYFGKVLKY
IYAHPTLKPQDYQAVAPYLGLDYDSVLFILRVFFELGFVKLDDDKLVGVKHPQKKPLSQS
KYLLATNSQIKFVNELRHMSTTTLLNYIDQLRN
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgaagtggaaacaaagaaatgcggagccgttagatcctaacttaattcaagaatatcaa
cttagtccaattgcggctaagttgttttctttgcggggaattaatacggctgaaaaattg
gatttttggtttaatagtagtgaagaggatttggcagatccctcattaatgcatgatctt
gataaggcggttgagcgaattaatcaagcgattgacagaggagaaaaaattactatttat
ggggattatgatgctgatggaattacttcaactgcaattatggtggaaactctaggtatt
ctaggtgctgatgtgcactattttattcctaaccgctttaaagagggatatggtccaaat
cttgataactataaaaagattgttgcagatggaactaaactcattattacggtagataat
ggggtaaccggcgtcgatgaagtagcttatgctaaaacagaaggtgtcgatacgattatt
accgatcatcatactttccaagaaaaagtgccagattcttatgctttagttcattgcaat
tatccaggtcaaacttatccttttgatgattattgtggggctggtgtagcttatacactt
tgccggaagttaatggaagatcctttaccagaattactcgatttagtgatgattgggacc
attggggatatggttaaggtgagtggagaaggtcatattattgttaagcgtggtttggaa
atcttcaatcgtaccgatcgaccaggattgcgtgctttggttaaaaatgctggccttaaa
ctaggaaatttagatgaaaccgatattggttttaatatttctccgcgtctaaatgcaact
ggacgcctagataatgcaagtttagctgtagaattgcttttagcagatgatgagtttgaa
gctaaacaattggccgataaaattgaagagttaaacaataaacggcgtgaactcacccaa
gaagtttataaaagctgtttaaatcaggttaagatgaacaattggcaaagaagtaatacc
ctagttttatatgatcctgattttcatgagggggttttaggtttagttgctaataaaatt
gctactactctgcataagccaactcttgttttaactaaaaatgatcaaggtgaggttaag
ggttctggccgctcaggtaaaaactttaatttgtttaacgctttgaatccattaaagaaa
ttatttactaaatttggtggtcatgattttgcctgtggcctatcaatgactgaagataag
attcctgagttgcgtgaaaagctagagagtggttttcatgttgagcaagaaagcgcagaa
gagtatgattttgaactccctctaaaagatttgtctttagacactctggagcaaataaat
caggcgggaccttttggtactgataatcctaaaccagtttttagtgtttctgattttcaa
attaaaaactttattcgaatgggtcaggagaagaatcatattcgctttaatgcggtaaaa
gatgatggttctcttactgtggtaggttttaacaaagattatttagataatgatctttta
ccttttatttcaaaggtatttgtagaattaaatcgcaatacttataagaataaagttagt
ttacaagccattatgaaaggcgttgattttgcagctccgaaattagctgtgccagcacca
ataatcgatttgcgtaatgaaagttatgttatgggctttgcggatcgttatttgcttttc
aatgagaaaaatattccagctgttgaaaatttaggaattgatccagaaaaaatcacttta
gttaaagattacgatcaagcagatgaagtagttgttttgctggatacaccaaaaaacaag
attgaattggaccaagctttacaaaataattatcagcaactatatttgcgctttttactc
gatcagcttcccgtagaaaagcttcctgctaaatcttatttcggaaaagtgttaaagtat
atttatgcccatcccactttaaaaccgcaagattatcaagcagtagctccttatttgggc
ttagactatgatagtgtattgttcattttacgtgtcttttttgaattgggctttgttaag
ttagatgatgataagttagtaggagttaaacatccccagaagaagcccctatctcaatct
aaatacttgcttgcaactaattctcaaattaaatttgttaatgaattgcggcatatgtca
acgactactttattaaactacattgatcagcttagaaattaa
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