Lactobacillus intestinalis: KBW87_04420
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Entry
KBW87_04420 CDS
T08339
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
liq
Lactobacillus intestinalis
Pathway
liq03030
DNA replication
liq03430
Mismatch repair
liq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KBW87_04420
03430 Mismatch repair
KBW87_04420
03440 Homologous recombination
KBW87_04420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
liq03032
]
KBW87_04420
03400 DNA repair and recombination proteins [BR:
liq03400
]
KBW87_04420
Enzymes [BR:
liq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KBW87_04420
DNA replication proteins [BR:
liq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KBW87_04420
DNA repair and recombination proteins [BR:
liq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KBW87_04420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
UTW39683
LinkDB
All DBs
Position
complement(968278..971394)
Genome browser
AA seq
1038 aa
AA seq
DB search
MKMATLQNLSAYTLLESPTRILDLLKTAKNKGYEAVGLTDINVTYGLVNFYELAQKVGIK
PLLGMQIRINGLIDSAEKYDLIVIAKSDQGYRNLLRLSSAINLLTNNGEKDRVLALSELK
KYLEELVIITPANLRSELVMLFQRQEKLGSDYLRAIKKIIPQSSSLYLGVYANESARNYI
NYVKSLSTQFKLPLVAVEDGQYLEPQQQFLRKSLTTIKNGEKLQDVVALAKQKGSHYMLS
SVELKEKYQNFGLEEAIENTWKIAQACEAKVVFKKPVLPKYQQNKFPTSKEYLFNLAKKG
LIRRFKNGQVPVNYQRRLNYELAVIDKMGFDDYFLIVWDVMNYCHQEKITTGPGRGSACG
SLVSYALKITEVDPIEYNLLFERFLNPARHEMPDIDLDIPDNRRDDVIKYMYHKYGVDHA
AQILTFGTLAAKQALRDTGRIFGFSDVEINKWANAVPSSKGKITLNEAYENSRELRLLVN
STKENRLLFQTARAIEGLPRHYSVHAAGLVISDKSIAGISALQAGPLDIEVTQQTKKYVE
SLGLLKIDFLGLRNLTILGDTLNLINQQGTHLDPHKIPLNDAKTLQLFDEGKTDAIFQFE
SNGIKRVLRSLHPDNFEDLVAVNALYRPGPMNNIDTFIARKKGQERIQYPDSSLEKILAP
TYGVLVYQEQVMQTAQVLAGFSLGEADILRRAMSKKEPDVIARQRNKFIQGTLKNGHPRL
VGERVYKYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHFPLEFYTAILNSSGAGKAQSYI
MQAQEAGIKFSTPDINQSQKDYTIKEGKILVGLRAIKGLRIDFVNQIVNLKRPFTSFSDF
LRKIDLKFLKVELIQILIKAGCFDNLHSNRNELLENCADFVDIIKLTGKNVSLSEGLGGV
PIKKAPVPSNTEKATMEEEVLGFSTTTTPLVAVQKYAQKFNAHALNSFNTNESGIGVGKL
IRIKKIKTKKGEEMAFATFADTTGNAEFTIFPEVYKKVESYLKEGQIYILGVKVQNDRFD
PNKKQYLLTNLRKVQFKE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggcaacacttcaaaatttgagtgcatatactttgttagagagtcctactcga
attttagatttattgaaaacagccaaaaataagggatatgaggccgtaggcttaactgat
attaatgttacatacggtttggttaatttctatgaattagcgcaaaaagtgggaattaaa
cctctgttagggatgcaaattcgaattaatggattaatcgatagtgcagaaaaatatgat
ttgattgttattgctaaaagtgatcagggctatcgtaatttgttaagattatcaagtgca
attaatcttttaactaacaatggtgaaaaagatcgtgttttggccttgtctgaacttaaa
aagtatttagaagaactagtcattattacaccagctaatcttcgtagtgaacttgtgatg
ctttttcagcgtcaagaaaagttaggtagtgattatctgcgagcaattaaaaaaatcatt
ccccaatcaagttcgctgtatttgggagtgtacgccaatgaatcggctagaaattatatt
aattatgttaaatctttaagtacacaatttaaattaccattagttgctgtagaagatggt
caatatttagaaccacaacaacaattcttgcgaaaatctttaaccactataaaaaatggt
gagaaattacaagatgtggtcgcgcttgctaagcaaaagggttctcactatatgctctct
agcgtggaattaaaggaaaaatatcaaaattttggattggaagaagcaattgagaatacc
tggaaaatcgcacaggcgtgtgaggcaaaagtggtttttaaaaagccagttttacctaaa
tatcaacaaaataagtttcctacttctaaagagtatttatttaatttagctaaaaaaggt
ctgattaggcggtttaaaaatggtcaagttccagttaactaccagagaagattgaattat
gaattagctgttattgataagatgggatttgatgattacttcttaattgtttgggatgta
atgaattactgccatcaagagaagattactactgggccaggacgtggatcagcttgtgga
tctttagtttcctatgctttaaaaattactgaagttgatccaatagaatataatttgctt
ttcgagcgatttttaaatccagctcggcatgaaatgccagatattgacttggatattcct
gataatcgacgcgatgacgtaattaagtatatgtatcataagtatggcgtagatcatgcg
gctcaaatcttaacctttggaactttagcagctaagcaagctcttagagacacaggcaga
atttttggatttagtgatgtagaaataaataaatgggctaatgctgtgccttcttctaaa
ggaaaaatcactttgaatgaagcttatgaaaattctagagagctaagacttttagttaat
tccactaaagaaaatcgtttattatttcaaacagctcgtgctatagaaggattgccccgt
cactattcagttcatgcagctgggttagtgatcagtgataaatctatcgctgggatttct
gctttacaagcgggtccattagatattgaagttactcagcaaactaagaaatatgttgaa
tcattgggattattaaagattgattttttaggtttgagaaatttaaccattctgggtgat
actctcaacttaattaatcagcaaggaactcatctagatcctcacaaaattccattaaat
gatgccaaaactttacaactttttgatgagggtaaaactgatgcgatctttcaatttgaa
tctaacggaattaaacgagttttacgatcattgcatccagataattttgaagatttggta
gctgtcaatgctttatatcgtcccggtccgatgaataatattgatacttttatagctcgg
aaaaaaggacaagagagaattcaatatcctgattcgagtctagaaaagatcttagcgcca
acttatggagttctagtttatcaagaacaagttatgcagactgctcaggttttagctggg
ttttctctgggagaagccgatattttaaggcgtgccatgtccaaaaaagagcctgatgtg
attgcaaggcaaagaaataagtttattcagggaaccttgaaaaatggccatccccgtcta
gttggagaaagagtctataagtatattgaacaatttgccaattatggattcaatcgatct
catgcagtggcttataccaaaattgctttttggttagcttatcttaaagttcactttcct
ctagaattttatacagccattttaaattctagtggtgctggaaaagctcaaagttatatt
atgcaagctcaagaagccggaataaagttttcaacgcctgatattaatcaaagtcagaag
gattatacaataaaagaaggaaaaattttagttggtttaagagctattaaagggcttcga
attgattttgtcaatcaaatagtgaatttgaagcgaccatttacttcttttagtgacttt
ttaagaaaaattgatttaaaatttttaaaagttgaattgatacaaatcttgattaaggcg
ggatgctttgataatttgcattctaatcgaaatgaacttctcgaaaattgtgccgatttc
gttgatattattaagcttactgggaaaaatgtttctctttctgaaggtctaggaggagta
cccatcaaaaaagctccagtaccaagtaatacagaaaaagcgactatggaagaagaggta
ttaggcttttcaactactacgactccgttagttgcagttcaaaaatatgctcaaaagttt
aatgctcatgctctgaactcttttaatactaatgagagtggaataggagtaggaaaatta
ataagaataaagaaaataaaaacgaaaaagggcgaagaaatggcctttgctacatttgct
gatacgacaggaaatgcagaatttacgattttcccagaagtatataaaaaagtagaaagc
tatttgaaggaaggacaaatttatattttaggggttaaagtccaaaatgatagatttgat
ccaaataaaaagcaatatttacttaccaatttgcgtaaagttcaatttaaagaataa
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