Leptospira interrogans serovar Linhai: LIL_10740
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Entry
LIL_10740 CDS
T03859
Symbol
srmB1
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lis
Leptospira interrogans serovar Linhai
Pathway
lis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIL_10740 (srmB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lis03019
]
LIL_10740 (srmB1)
Enzymes [BR:
lis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LIL_10740 (srmB1)
Messenger RNA biogenesis [BR:
lis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LIL_10740 (srmB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrD-helicase
CMS1
Motif
Other DBs
NCBI-ProteinID:
AJR13342
LinkDB
All DBs
Position
1:complement(875275..876897)
Genome browser
AA seq
540 aa
AA seq
DB search
MKFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVI
HNILTKGIQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKDLEG
LNGIIVATPGRLIDMIKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRKQTL
LYSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTNLIINSK
EEGQGIIFTNYKANIPKIVYTLRKYGVPVTGISSELDQKKRLRLLRDFKSGKYRYMVATD
VASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRKGKAIGFCSESDYVELEKIEKY
LKQKIEILEVNEEYIQFPAGDFQSFIGGDSYDREKETHFKQNGKRPHDNDRAPHKHDRNR
KRDKRHTSHTHSTAKDSHKKKPAAAIQEAELFLQKADSVLSSEPKGKKSAKDQHRFQNKD
KQSRTGRGAQNSRNQNKNQQFGKQYDKNKRNLFDINDTVKEDTKKKKVSIWQKIKSIFGG
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagaactatccatccatccaaaattactttctgccattcaagaaatcgga
tatacggaactaactccgatccaagagaaatcgattccacatggattggaaggaaaagat
attaccggacttgcacaaaccggaaccggaaaaaccgtcgcgtttttaattcctgtcatt
cataacattctaaccaaaggaatacaaggaattgcagcgctcgtattagctcccacaaga
gaacttacgatgcagatcgcggaagaggcaaaaaaattactcaaacattccgaaggaatc
cgatcagtcccgattataggaggaaccgattacaagtcccaaaataaggatttagaagga
ttaaacggaattatcgtcgctactcccggaagattgatcgatatgattaagtctggttct
attgatatatcgaacgtagaattttttgtactcgatgaagcggatcgaatgttggatatg
ggatttatccaagacatccgttggcttttacataagtgtaagaatcggaaacagaccttg
ttgtattccgctactttgtctgtggaagtgatgaggctcgcttatcgtttcttaaacgaa
ccagtagaaattcaaatcaatcctgaaaagattatcaccgaaagaattgatcagaaaatt
gttcatttgggaagagaagaaaaaattccttatatgaccaatctaatcataaactcaaaa
gaagaaggtcaagggatcatattcacaaattataaagcgaatattccaaaaattgtatat
actctccgtaaatatggggttccagtaaccggaatatcttccgaattggatcagaaaaaa
agacttagacttctccgagattttaaatccggaaaatacagatacatggtcgcaaccgac
gtcgcttccagaggaattgacgtagaaaatatagatatcgtctataattacgatcttcct
caggataccgaaaattacgtacacagaatcggtagaactgcacgggcgggaagaaaagga
aaagcgattggtttttgttccgaatcagattacgtggaactagaaaagatagaaaaatat
ctaaaacaaaaaatcgaaattttagaagtaaacgaagaatatattcagtttcctgcaggt
gattttcaatcttttattgggggggattcttacgatcgagaaaaagaaactcattttaaa
caaaatgggaaacgtcctcacgacaacgaccgcgccccacataaacacgatcgaaatcgc
aaaagggataaacgacatacaagtcatacacattctaccgcgaaagattctcacaagaaa
aaaccggctgctgcaattcaagaagcagagttatttttgcaaaaggcggattccgtttta
tcctcagaaccgaaaggaaaaaaatctgcaaaagaccaacatagatttcagaacaaagac
aaacagagccgaacggggcgtggtgcacagaatagtcgaaatcagaataaaaatcaacag
ttcggtaaacaatacgataaaaacaaacggaatctattcgatataaacgatacggtaaaa
gaagatactaaaaagaaaaaggtttcgatttggcaaaaaatcaaatctatctttgggggc
tga
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