Leptospira interrogans serovar Linhai: LIL_10771
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Entry
LIL_10771 CDS
T03859
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lis
Leptospira interrogans serovar Linhai
Pathway
lis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LIL_10771 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lis03021
]
LIL_10771 (rpoC)
03400 DNA repair and recombination proteins [BR:
lis03400
]
LIL_10771 (rpoC)
Enzymes [BR:
lis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LIL_10771 (rpoC)
Transcription machinery [BR:
lis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LIL_10771 (rpoC)
DNA repair and recombination proteins [BR:
lis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LIL_10771 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AJR13373
LinkDB
All DBs
Position
1:909601..913815
Genome browser
AA seq
1404 aa
AA seq
DB search
MRSHNDFESITIRLASPERIKEWSYGEVKKPETINYRTLKPEKDGLFCEKIFGTTKDWEC
YCGKFKSIRYKGVVCDKCGVEVTHSKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDM
TVNQLKSVLYFEKYVIIDPADSGRNRGELIDEEEYHAYLDEYGDKFVAGIGADAIKELLA
RIDVDAEARMIRQKIQDKDKISDKRILKRLEVLEAFRDSGNRPEWMVLDIVPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLALKAPEIIVRNEKRMLQEAVDALFDNSR
RKRAVKGKGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKYHEMGLPKK
MALELFKPFIMKRLVDLDLAPNIKSAKKKVEAEDKEVFDVLEYVVKEHPVMLNRAPTLHR
LGIQAFLPILVEGKAIKLHPLVCHAFNADFDGDQMAIHVPLTPKAQLETWMLMLSPHNIL
NPANGHPICGPTQDIVLGIYYLTSELPSEPGVPLKSFSNLEEVHYAIDRGVVEFRTKISV
YHQGKILETTPGRLIFNTILPEGYAYVNRPLSDKETNRIIADVYDKYGPAKTVLMLDDIK
KLGYRYATLFAPTISIEDIRVSPGKVGLVGDANKEVEKADSEYRKGIITNEERRKKVIEI
WTKTNDLITESMFKELEKDKGGFNPVFIMAASGARGSKQQIRQLAGMRGLMAKPSGEIIE
LAIRSNFREGLSVLEFFISTHGARKGLADTALKTADAGYLTRRLVDISQDVIISEDDCGT
EESISLGVVKEGENVIVSLNDRVFGRYTAEDVIDPVTDQVVYPRNTLITREVGQKVENLG
YDKIRVRSPLTCESKQGVCIRCYGMDMARLIPAEIGEAVGTIAAQSIGQPGTQLTMRTFH
IGGAASAKVQEKEHKVSYTGIVNNINGRLITNEKSQSVFSRRGSIVIQRLIQQYKTEELS
NLRVENGQKVDKGELVATSPAGENITSEMPGTIHIENGLFRILGEEAVIPVKTGTIVNVK
VNDITQPNQPLAEFDPYNEVGISEIDGTVQWMDLEIGKNVRRDEDLRTSNILLKVIEQRR
EKLNPRIAVISGGSREEYSVPVDAIISVQDGDKVKAGDILFKIPTVAEKTRDITGGLPRV
DELFEARRPKDATTLAETDGKIEISGEIVKEKRVLYIHPDNPDLEKVKVTIPIGKQIRVR
NGDFVKRGDQIDDGNLDPHDILRVKGVTALQVYLVQEVQEVYRLQGVHINDKHIEVVVRQ
MLRKVLITDSGDTSFVNQQQIDRLVFNEENKRVIAEGGSPAESVPILLGLTKASLNTESF
FSAASFQETTKVLTDAAIKGKTDNLMGLKENVIIGHMIPAGTGTKKYKDIAVFKSAYGDL
DRPLEEEEEEEIPQAIAEESDAEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgagatcccataacgactttgaatcgattacaatccgcttagcatctcccgaaaggatc
aaagaatggtcctatggagaagttaaaaaaccagaaaccatcaactatcgtacgttaaag
cccgaaaaagatggccttttctgtgagaaaatttttggaaccacgaaggactgggaatgt
tactgcggtaagttcaagtccattcgttacaagggcgtggtctgcgacaagtgcggggtc
gaggtgactcactccaaagttcgtcgtgaaagaatgggacacatcgaactcgcggctccc
gtttctcatatctggtattaccgttccgttccttccagaatgggacttctgctcgatatg
accgtgaaccaactcaagagcgttctctactttgaaaaatacgtaatcatcgatcctgcg
gattcgggaagaaaccgcggtgaactcatcgacgaagaagaatatcacgcatacctcgac
gagtacggagacaagttcgtagccggaatcggcgcggacgcgatcaaagaacttcttgct
cgtatcgacgtggatgcggaagcgagaatgatccgccaaaagatccaagacaaggataag
atttccgataaaagaattctgaaacgtctcgaggttctcgaagcgttccgtgattccgga
aaccgtcccgagtggatggtactcgacatcgttccagtcattcctccggaacttcgtcct
atggttcagttagaaggcggtagattcgcgacttccgacttaaacgatttataccgtcgt
gttatcaaccgtaacaaccgtctcaaaagacttctcgcgttaaaagctccggagatcatc
gttcgtaacgaaaagagaatgttgcaggaagcggtggacgctctcttcgacaactctcgc
agaaaacgcgcggtcaaaggaaagggaaaccgtcctcttaaatccatctccgatatgctc
aaagggaaacaaggtcgtttccgccagaaccttctcggtaagagggtggattactccggt
cgttccgtgatcgtagtcggtcccgaactcaaataccacgagatgggacttccgaagaaa
atggctttggaacttttcaaacctttcatcatgaagagacttgtggatctggacttggcc
ccgaacatcaagtccgctaagaagaaagtggaagcggaagacaaggaagttttcgacgtt
ttagaatacgtcgtaaaagagcaccctgtgatgttgaaccgtgcgccgaccttgcaccgt
ctcgggatccaggcgttcttgccgatccttgtggaaggaaaggcgatcaaacttcatcct
ctcgtttgtcatgcgttcaacgccgactttgacggggatcagatggcgatccacgttcca
ctgactccgaaagctcagttggaaacatggatgctcatgctttctcctcacaatattttg
aaccccgcgaacggacatccgatctgcggaccgactcaggatatcgtactcggaatttat
tatctaacttccgagcttccatccgagccgggagtccctctcaaatctttctcaaacttg
gaagaagttcactatgcgatcgacagaggtgtggttgaattcagaaccaagatcagcgtt
tatcaccaaggaaagattctcgaaacgactccggggagattgatcttcaataccattctt
cccgaaggatatgcatacgtaaacagaccactttctgataaggaaaccaaccggatcatc
gcggacgtttacgacaaatacggtcccgctaagactgtattgatgctcgacgacattaaa
aaattaggatatcgttatgcgactttgttcgctcctaccatctccatcgaagacattcga
gtgtctccaggtaaagtgggtcttgtaggcgacgcaaataaggaagtcgaaaaagcagac
tccgagtatcgcaaagggatcattacaaacgaagaacgtcgtaaaaaggtaatcgagatc
tggacaaaaacgaacgatctcatcaccgagtctatgttcaaggaactcgaaaaagacaaa
ggcggattcaaccccgtgtttattatggcggcttccggtgcgagaggatcgaaacaacaa
attcgccagctcgcgggaatgcgcggtctgatggcgaaaccttccggtgaaatcattgag
cttgcaattcgttcgaacttccgcgaaggactttcggttcttgaattctttatctctact
cacggtgcgagaaaaggtctcgcggatactgcgttaaaaactgcggatgcaggttactta
actcgtcgtcttgtggatatttctcaggacgtgattatctccgaagatgattgtggaacg
gaagaatctatttctcttggcgtcgtaaaagaaggggagaacgtgatcgtttccttgaac
gaccgcgtattcggacgttataccgcggaagacgtgatcgatcctgtgaccgaccaagtc
gtatatccgagaaacactttgatcacgagagaagtcgggcaaaaagtagaaaacctaggt
tatgataagatccgagttcgttctcctctgacttgtgaatctaaacaaggtgtttgtatc
cgttgttatggtatggacatggcgagactgatccctgcggaaatcggggaagcggtcgga
acgatcgcggctcagtccattggccagcctggaactcagttgacgatgagaacgttccac
atcggtggtgcggcgtccgcaaaagttcaagaaaaagaacacaaggtttcttacacgggt
atcgtaaacaatatcaatggacgtttgattacaaatgaaaaatcacagagtgtgttctct
cgtcgtggttcgattgtaattcaaagattgatccagcaatacaaaaccgaagaactttcc
aacttacgcgttgaaaacggacagaaagtggacaagggagagttggtggcgacttctccg
gctggggaaaacatcacttctgaaatgccgggaactattcatatcgagaatggcctcttc
cgcatcttgggagaagaggctgtaattccagtaaaaaccggaacgatcgtaaacgtaaaa
gtaaacgacatcactcaaccgaaccagcctctcgccgagtttgacccttataacgaagtg
ggtatttccgaaatcgacggaaccgttcagtggatggatctcgagatcggtaagaacgtc
agaagagatgaagatttaagaacttctaatattcttctgaaagtgatcgaacaaagaagg
gaaaaactcaatccgaggatcgctgttatatctggtggttccagagaagaatattcagtt
ccagtggacgcaatcatttccgttcaagacggagacaaggtgaaagctggagacattctc
tttaagattcctacggtcgctgaaaaaactcgggatattactggtggtcttccaagagtt
gatgaactttttgaagcaagaagaccgaaagacgcgaccactctcgccgaaactgacggt
aagattgaaatcagcggtgagatcgttaaagaaaaacgagttctttatatccatccagac
aatccggatctggaaaaagtgaaagttacaattccgattggtaaacagattcgggttcgt
aacggagactttgtcaagagaggagaccagatcgacgacggtaatcttgatcctcacgac
attctcagagtaaaaggtgttaccgcacttcaagtgtatctcgttcaggaagtccaagag
gtttataggttgcaaggggttcatatcaacgataaacacatcgaagttgtggttcgtcag
atgcttagaaaagttctgattactgattcgggagatactagtttcgtaaaccaacagcaa
attgatagactcgtgttcaatgaagagaataagagagtaatcgcggaaggtggttctcct
gcggaatcggttccgattcttcttggattgacaaaggcttctttgaacacggaatccttc
ttctcggcggcttccttccaggaaaccaccaaggttcttacggatgcggcgatcaaaggt
aagactgataacttgatgggtctcaaagagaacgtcatcatcggtcatatgattcctgct
ggaactggaacgaagaagtataaggatattgctgtattcaaatctgcttatggagatttg
gatcgtcctttggaggaagaagaggaagaggaaattcctcaagcgattgctgaggaatca
gacgcggaagaatag
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integrated database retrieval system
