Qingshengfaniella alkalisoli: FPZ52_01390
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Entry
FPZ52_01390 CDS
T06129
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lit
Qingshengfaniella alkalisoli
Pathway
lit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ52_01390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lit03019
]
FPZ52_01390
Enzymes [BR:
lit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FPZ52_01390
Messenger RNA biogenesis [BR:
lit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FPZ52_01390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
AAA_19
HEM4
DUF6830
Motif
Other DBs
NCBI-ProteinID:
QDY68403
UniProt:
A0A5B8ISJ6
LinkDB
All DBs
Position
256883..258142
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AA seq
419 aa
AA seq
DB search
MTKFSELGLSERLVHKLDALGHDTPTPIQAEAIPWALKGRDIMGLAQTGTGKTAAFSLPM
IERILNSGDRAAPKEVTALVLAPTRELARQITDTLAPLIKRTNLRVGLVVGGMSVGAQAK
RLSRGTDILVATPGRLMDHLERGSVSLSNTQFLVLDEADQMLDLGFIHTLRKIAKLLPED
RQTLLFSATMPKQMEEISESYLSRPVKVEVAPQGKVADKIEQAVHFVAQTEKAGLLKEYL
AKLPKARSIVFSRTKHGAERLMKGLNADGFNAAAIHGNKSQGQRDRALASFRSGDVQILV
ATDVAARGIDIRDVTHVFNFDLPNVAENYVHRIGRTARAGAEGEAIAFCAPDEMSDLRGI
ERLMKLDIPVIGGTAWAHEDAPKSKGRGRRGSSGGGGRGPKPATNAKPARRRHKRRRAA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaaattttccgaactcggcctgtccgagcgcctcgtccacaaacttgacgctctg
ggtcacgacacgcccacgcccattcaggcggaggccattccgtgggcactgaaaggccgt
gacatcatggggctggcccagaccggcactggcaagacggcagcgttctcactgcccatg
attgaacgcattctgaattccggtgaccgggccgcgccgaaagaggtgacagcgctggtg
cttgcgccgacgcgtgaactcgcccgccagatcaccgatacgctcgcaccgctgatcaag
cgcaccaatctgcgcgttgggctagtcgttggtggcatgtccgtcggcgcacaggcaaag
cgcctaagccggggaaccgacatcctcgtcgcgacgcccggacgcttgatggaccatctg
gagcgcggatcggtgagcctgtcgaacacgcagttcctcgttctggatgaagcggatcag
atgcttgatctgggtttcatccacaccttgcgcaaaattgccaagctgctgcccgaagac
cgtcagacgcttctgttctcggccaccatgccgaagcaaatggaagagatttcggagagc
tatctgtcgcggcccgtgaaagtcgaagttgcgccccaaggcaaggtagctgacaagatc
gaacaggcggtccatttcgttgcacagaccgaaaaggcggggctgctgaaggaatatctt
gcgaagctgccgaaggcacgctcgatcgtcttcagccgcaccaagcacggtgcagagcgc
ctgatgaaaggactgaatgccgatggcttcaacgcggccgcgatccatggcaacaaaagc
caagggcagcgggatcgcgcgttggcctcgttcagatctggtgatgtgcagatccttgtg
gccacggatgttgcagcgcgtggcatcgatattcgtgacgtgacgcatgtgttcaacttc
gatctgccgaacgttgcggagaattatgttcaccgtatcggccggaccgcgcgtgccggg
gccgagggcgaggcaattgcattttgcgctccggacgagatgtccgacctgcgcgggatc
gaacggttgatgaaactggatattccggtgattggcggcacagcttgggcgcatgaggac
gcgccgaagtccaaaggtcgtggccgtcgcggttcctctggcgggggtgggcgaggcccg
aaacccgcgacgaatgcaaagcccgcgcgacgccgtcacaagcgtcgccgcgcagcataa
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