KEGG   Qingshengfaniella alkalisoli: FPZ52_04920
Entry
FPZ52_04920       CDS       T06129                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
lit  Qingshengfaniella alkalisoli
Pathway
lit02024  Quorum sensing
lit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FPZ52_04920 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    FPZ52_04920 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lit03019]
    FPZ52_04920 (hfq)
   03036 Chromosome and associated proteins [BR:lit03036]
    FPZ52_04920 (hfq)
Messenger RNA biogenesis [BR:lit03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     FPZ52_04920 (hfq)
Chromosome and associated proteins [BR:lit03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    FPZ52_04920 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM AcMNPV_AC11
Other DBs
NCBI-ProteinID: QDY69035
UniProt: A0A5B8I6C2
LinkDB
Position
complement(952376..952609)
AA seq 77 aa
MAADKQNLQDAFLNHVRKAKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPSQPISLYEGDN
NT seq 234 nt   +upstreamnt  +downstreamnt
atggcggctgataaacaaaaccttcaggatgcgttcctaaaccatgtgcgaaaagccaag
gttccggtgacgatatttctgatcaacggtgtaaaacttcagggtgtaattacctggttc
gataatttctgtgtactgctacgtcgtgacgggcagtcgcaattggtgtataagcacgcg
atctcgacgatcatgccaagccagccaatcagcctatatgagggcgacaactga

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