Qingshengfaniella alkalisoli: FPZ52_10400
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Entry
FPZ52_10400 CDS
T06129
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lit
Qingshengfaniella alkalisoli
Pathway
lit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ52_10400 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lit03021
]
FPZ52_10400 (rho)
03019 Messenger RNA biogenesis [BR:
lit03019
]
FPZ52_10400 (rho)
Transcription machinery [BR:
lit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FPZ52_10400 (rho)
Messenger RNA biogenesis [BR:
lit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FPZ52_10400 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_22
OB_RNB
AAA_25
ATPase_2
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QDY69987
UniProt:
A0A5B8J6C2
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All DBs
Position
2066986..2068257
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AA seq
423 aa
AA seq
DB search
MTKECLNLADLKAKSPQDLLAMAEELEIENASTMRKGEMMFQILKERAEDGWEISGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPDMIRLHSMRTGDTVEGVIQAPNENERYFAMTK
VTQINFEDPERTRHKINFDNLTPLYPDERLTMEIEDPTVKDRSARVIDLVAPIGKGQRSL
IVAPPRTGKTVLLQNIAHSIEKNHPECYLIVLLIDERPEEVTDMQRNVKGEVISSTFDEP
ASRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTTVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVF
PAMDILKSGTRKEDLLVDKVDLQKTFVLRRILNPMGTTDAIEFLLSKLKQTKTNSEFFES
MNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaaagaatgccttaacctcgctgatcttaaagcgaagagcccccaggatcttctc
gcgatggccgaggagctggagattgaaaacgcctctacgatgcgtaagggcgaaatgatg
ttccagatcctcaaagaacgcgccgaagatggctgggaaatttccggcgacggtgtgctg
gaggtactgcaagacggcttcggcttcctgcgttcgcccgaagccaactatctgccgggt
cccgatgacatctatgtgtcgccggacatgatccgcttgcattcgatgcgcaccggcgac
actgtcgaaggtgtcatccaggcgccgaacgagaatgagcgctacttcgcgatgacgaag
gtaacccagatcaacttcgaggatccggagcgcacccgtcacaagattaacttcgacaac
ctgacgccgctttatcccgatgagcggctgacgatggaaatcgaagacccgaccgtcaag
gaccgctcggcccgcgtcatcgatctggttgcccccatcggtaaaggccagcgttctctg
attgttgcaccgccgcggacgggtaaaaccgttctacttcagaatattgcgcattcgatc
gaaaaaaatcacccggaatgctacctgatcgttctactgatcgacgaacggccggaagaa
gtcaccgatatgcagcggaacgtaaagggagaggtcatttcctcgaccttcgacgagcct
gcgtcgcgccacgttgccgtgtccgaaatggtgatcgagaaggccaagcgccttgtggaa
cacaagcgtgatgttgtgatcctgctcgactcgattactcgtctgggccgcgcctataac
acgaccgtaccgtcttcgggtaaagtgctgaccggcggtgtcgatgcaaacgcgttgcag
cgtccgaagcgtttcttcggcgctgcgcgaaacatcgaagagggcgggtcgctgaccatc
atcgcgacggccctgatcgacacaggaagccgtatggatgaggtcatctttgaagaattc
aaagggactggtaactcggaaatcgtgcttgatcggaaggttgccgataaacgcgtcttc
ccggctatggatattctgaagtccggcacgaggaaggaagatctgttggtcgacaaggtt
gatcttcagaagaccttcgttcttcgccggattctcaacccgatgggcacaacggacgcg
atcgagttcctgctatccaagctgaaacagaccaagacgaattctgagttcttcgagtcg
atgaacacctga
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