Lysinibacillus irui: OU989_00395
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Entry
OU989_00395 CDS
T09550
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
liu
Lysinibacillus irui
Pathway
liu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
liu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OU989_00395 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liu03400
]
OU989_00395 (mfd)
Enzymes [BR:
liu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OU989_00395 (mfd)
DNA repair and recombination proteins [BR:
liu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OU989_00395 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
AAA_22
IstB_IS21
ISP_coupler
Motif
Other DBs
NCBI-ProteinID:
WDV07005
UniProt:
A0AAJ5RL03
LinkDB
All DBs
Position
78164..81676
Genome browser
AA seq
1170 aa
AA seq
DB search
MEVLRQLVSQDKHITSFLQEIQSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPN
LLQAQKMVDELAGLLGEEYVHYYPADEFIAADLSVASPELRAERIATLDCLARGEKAIYV
IPVAGLRKIMQPKEHWQQYFLQTAIGDDIEIDKWLQTLVEMGYVRNSMVTTPGEFALRGG
ILDIYPPYLESPIRIELFDTEVDSIRTFSADDQRSIDKLQKIRILPAAEVILTKAERQSL
SGRLESALAASLKKVKKQETKELLYQHIQYDIELLQQGNLPDYVNKYGSLLYDKTAYLGD
YFAQDGIVLFDELGRIQEVMDAWEREEDEWFLSLIEEGKMVHDVKPAFTLKEILAMLPQQ
KLSFSLFSRTFSGITFNKTTNFSCKPMQQFHGQMALLQSEVERWFLGKFTVLIVARDKER
VKRVQQMLEEYDIHTTIGEPAEPGIYIVDGGLSSGFELPLQRLAIVTEDELFKQQAKKKA
RTKKMTNAERIKSYTEIKPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHIRYRADDKLY
VPVEQIDLIQKYVASEDREPKLHKLGGAEWKKTKAKVSSAVQDIADDLIKLYAKREAEKG
HAFTPDNDDQRNFEAMFPYEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAIQDGKQVAFLVPTTILAQQHYETIRERFQDFAINVGLLSRFRTKKEQTATLKGLK
EGQVDIVIGTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVE
DMARKVEEIQVLVPEARIGHAHGKMTESELESVILAFLEGDYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQDAIAERQTGVKKEEKPDIEI
LLSVDAYIPDVYIPDGYQKIQMYKRIKAMDQVEEYDEIMEELEDRFGDLPIETERLLRIA
RMKVWGLGAGVVSVKEKQKLITILLSEQGTANVDGSKIIEESMKFERAVGFGMDGMQLKL
TIDERKCGKYQPFDLLEELMQIIDKAKKQH
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtggaggttttacgacaacttgtgtcgcaggataaacatattacatcatttttacaggaa
attcagagcggtcaaactgcatcacagcttattacaggtttaacaggaagcgcacgacca
gtaatggttgatgcgttatttgaatatgttaagaagcccatctatattgtttctcctaat
ctattgcaggcacaaaaaatggttgatgagcttgctggattattaggtgaagaatatgta
cattattaccctgctgatgaattcattgcagcagatctttctgtggcatcacctgaatta
cgtgcagagcgaattgcaacacttgattgtttagctagaggtgagaaggctatctatgta
atacccgtagcaggtttaaggaaaattatgcagccaaaggaacattggcaacaatatttt
ttacaaacagctataggtgatgatatcgaaattgataagtggttacaaacattagttgag
atgggttatgttcgtaattcaatggtgacaacacctggagaatttgcgttgcgtggaggc
attttagatatttatcctccttatttagaatcgcctattcgtattgaattgtttgataca
gaggttgactctatacggacattttcagcagacgaccaacgctctattgataaattgcaa
aaaattcgtattcttcctgctgcagaggttattctgactaaagcagaaagacagtcgcta
tctggtcgtttggaatccgccttagcagccagcttaaagaaggtcaaaaaacaggaaact
aaggagttactgtatcagcatattcagtatgatattgaactgttacaacaaggaaactta
cctgattacgtcaacaaatatggttcattattatacgataaaacggcctatctgggagat
tactttgcacaggatggcattgtgcttttcgatgagcttggacgcattcaagaggttatg
gatgcatgggaacgtgaagaggatgaatggtttttatcattaattgaagaaggaaaaatg
gttcatgatgtcaaacccgccttcacgctaaaagaaatactagcgatgttgccacaacaa
aagctttcgttttcgttattttcacgaacattttcagggatcacatttaataaaacaact
aatttttcttgcaagcctatgcagcaatttcacgggcagatggcattgctacaaagtgaa
gtagaacgctggttccttggtaaatttacggtactaattgttgcaagggataaagaacgt
gtgaaacgggttcagcaaatgcttgaagaatacgatattcatacaacaataggtgaacca
gcagaacctgggatttatattgttgatggtggcttatcgagtggctttgaattaccgttg
cagcgcttagcaattgtgacagaggatgagctctttaagcagcaggcaaagaaaaaagcg
cgaacaaaaaaaatgaccaatgctgaacggattaagagctatacagaaattaagccgggt
gattatgttgtgcatgttcatcatgggattggtaaatatattggtgtggaaacgctagag
gtcaatggtacacataaagattatttgcatattcgataccgtgctgacgataaattgtat
gtacctgtagagcaaatagacttaatccaaaaatatgtggcatcagaagatcgtgaacca
aagctacataaattaggtggagcagagtggaaaaaaactaaggcgaaggtatcctctgct
gtacaggatattgctgatgacttaattaagctttatgccaagcgagaagcagagaaaggg
catgcttttacacctgataatgatgatcagcgtaatttcgaggccatgttcccttatgaa
gaaacagaggatcagcttcgatctattgttgaagtaaagcgagatatggagcgagaacgc
cccatggatcgtttagtatgtggtgatgtaggctatggtaaaacagaggtagccattcgc
gcagcatttaaggctattcaagacggtaagcaggtagctttccttgtccctactactatt
ttggcccagcagcattatgaaacaatccgtgagcgctttcaggactttgctattaatgtt
ggattattatcccgtttccgcactaaaaaagagcaaactgcaacattaaagggtttaaaa
gaggggcaagtcgatatagttatcggaacacaccgaattttatctaaagatttaattttc
caagatcttggtttgttaattgttgatgaggaacagcgttttggtgtgacacataaggaa
aaaattaagcaattaaagactaatgtcgatgtcttaactttaacggctacaccaatccca
cgtactcttcatatgtctatggtaggtgttcgggatttgtctgttattgaaacaccacca
gccaatcgtttcccagtccaaacgtatgtaatggaacatagtggagcattagtgcgagaa
gcaattgagagagaaatggcacgtggcggacaagtgttttatttatataatcgagttgaa
gatatggcccgtaaggtagaggagattcaggtactcgttcctgaggcgcgaataggtcat
gcgcatggaaaaatgacagagtcagaattggaatcagtgattttagcctttttagagggt
gactatgatgtccttgttacgacaaccattattgagacaggtgttgatataccgaatgtg
aatacattaatcgtccatgatgctgatcgaatgggcttggcccagctttatcagttacgt
ggacgggttggacgttcaaaccgggtagcatatgcgtactttatgtatcaaagagacaaa
gtattgacagatgtagccgagcagcgtttacaggcaattaaagagtttactgagcttggc
tcaggctttaaaattgccatgcgggatttatctattcgaggcgcaggtaacttactcgga
gcgcagcaacatggctttattgattcagtcggctttgatttatattctcaaatgcttcaa
gacgccattgctgaacgacaaacaggtgtaaaaaaagaagagaagccagatatcgaaata
ttgctaagtgttgatgcgtatattcctgacgtctatattccggatggatatcaaaaaatc
caaatgtataaacgcattaaggcaatggatcaagtagaggaatatgatgaaatcatggag
gaattagaggatcgatttggcgatcttccaattgaaacagagcgtttactgcgaatagca
cgaatgaaggtttggggtcttggcgcaggagtagtatctgtaaaggaaaagcaaaaactg
attacaattctgttgtctgaacagggaacagccaatgttgatggcagtaaaatcattgaa
gaatcgatgaaatttgaacgtgctgtcggttttggtatggacggcatgcagttaaaatta
acaatagatgagcgaaagtgtggaaaatatcaaccatttgatttgttggaagagctcatg
caaattattgataaagcaaaaaaacagcactag
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integrated database retrieval system
