Lysinibacillus irui: OU989_02495
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Entry
OU989_02495 CDS
T09550
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
liu
Lysinibacillus irui
Pathway
liu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
liu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU989_02495 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
liu03021
]
OU989_02495 (rho)
03019 Messenger RNA biogenesis [BR:
liu03019
]
OU989_02495 (rho)
Transcription machinery [BR:
liu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OU989_02495 (rho)
Messenger RNA biogenesis [BR:
liu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OU989_02495 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
ATPase_2
AAA
AAA_22
AAA_25
DUF3418
AAA_24
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WDV07369
UniProt:
A0AAJ5RUV0
LinkDB
All DBs
Position
512626..513909
Genome browser
AA seq
427 aa
AA seq
DB search
MSALTIAQLENMTLKELYALARQYKISYYSKLTKKELIFAILKTRSEQEGYFFMEGVLEI
VSQEGFGFLRPINYSPSKEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLQVDA
VNGEDPEVAKERVHFPALTPLYPNRQIKLETTQRNLSTRIMDLVAPVGFGQRGLIVAPPK
AGKTSLLKEIANAITTNHPEAELIVLLIDERPEEVTDIERSVNADVVSSTFDEVPENHVK
VAEIVLERARRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GSARNIEEGGSLTILATALVDTGSRMDEVIYEEFKGTGNLELHLDRQLAERRIFPALDIR
RSGTRKEELLLEPEQLEKLWAIRKTFSDAPDFAERFLKKIRTTKSNEEFFEKLNEDMKKA
TKGKGLL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcattgacaatcgctcaattagaaaacatgacgttaaaagagctttacgccctt
gcacgccaatataaaatttcatattatagcaagctaacgaaaaaagaattaatatttgct
attttgaaaacgcgttcagagcaagagggctatttctttatggaaggcgtactagaaatt
gtttcgcaagagggctttggcttccttcgaccaatcaactactctccaagtaaagaagat
atttatatttctgcatcccaaatacgtcgctttgatctacgtaatggggacaaggtgtca
ggaaaggtgcgcccaccaaaggaaaatgagcgctattatggcctattacaagtagatgct
gttaatggcgaagatcctgaagtggcgaaagaacgtgttcatttccctgcattaacacct
ttatatccgaatcgacaaattaagctagaaacaacacaacgtaatttatcgacacgtatc
atggatttagttgcacctgtgggctttggccaacgtggtttaatcgttgcaccaccaaag
gcggggaaaacatctttattaaaagaaatcgcgaacgccattacaaccaatcatcctgaa
gcagagttaattgtcttactgattgatgaacgtcctgaggaagttacagatattgaacgt
tctgtcaatgcagatgttgtcagctcaactttcgatgaagtgccagagaaccatgtaaaa
gtggcagagattgtattagaacgtgcacgacgtttagtggagcataagcgtgatgtcatt
attctaatggactcaattacacgtttagcgcgcgcttataacctagtaattccaccaagt
ggacgtacactttcaggtggtattgatccggcggctttccatagaccgaaacgtttcttt
ggttcagctcgaaatattgaagaaggcggtagcttaacgattttagcaacagctttagtc
gatacgggttcacggatggacgaagtaatttatgaagaatttaagggaacaggtaattta
gagctccatcttgatcgtcagcttgcagagcgccgtattttcccagcgcttgatattcgt
cgttcaggtacacgtaaagaagagcttcttcttgagccagagcaacttgaaaagctatgg
gctatccgtaaaacgttttcagatgcgcctgattttgcagagcgcttcctgaaaaaaata
cgtacaacaaaatcgaatgaagagttttttgaaaaacttaacgaagatatgaaaaaagca
acaaagggtaaggggcttttataa
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