Lysinibacillus irui: OU989_13210
Help
Entry
OU989_13210 CDS
T09550
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
liu
Lysinibacillus irui
Brite
KEGG Orthology (KO) [BR:
liu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
liu03016
]
OU989_13210
Enzymes [BR:
liu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OU989_13210
Transfer RNA biogenesis [BR:
liu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OU989_13210
Prokaryotic type
tRNA splicing ligases
OU989_13210
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Ins_allergen_rp
Motif
Other DBs
NCBI-ProteinID:
WDV05269
UniProt:
A0AAJ5RPA1
LinkDB
All DBs
Position
complement(2603358..2604590)
Genome browser
AA seq
410 aa
AA seq
DB search
MIEINGRFTDAKIFAQTALQTAIDQIQELTDQAFMAGTKVRIMPDYHAGKGCVIGTTIQL
QNRVVPNLVGIDVGCGVFVAQLDVSTVDFAKLDSIIRTHVPSGQEIHKEVSPARQFLEFE
GKQFRASGLKDEYTNLSLGTLGGGNHFIELAKDEEEQHYLLIHTGSRYVGAKVANWHQKR
AYENLRRQDLTEKIAELKRLGREKDIQPMILAYKEQNPAVPKELAYLEGDYFHDYIHDMK
IAQQFARMNRWTIAEIIAKQMGWHFTDTFDTIHNYIDTETMTLRKGAVRANKGEKLVIPM
NMRDGSLICIGKGNAEWNYSAPHGAGRMFSRRAAKKALNMNDFKDTMQGIWTTSVNEETL
DEAPMAYKPMSEIISAIGETVDIVKVIKPVYNFKASEAAKPYERKGKVDD
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
ttgattgaaattaatggccgctttacggatgcaaaaatatttgctcaaacagcgctccaa
acagcaatcgaccaaattcaagaattgacagatcaggcgtttatggctggtacgaaagta
cgtattatgccagattatcatgcgggcaaaggctgtgtcattggcacgactattcaattg
cagaatcgtgttgttccaaaccttgttggaattgatgtaggatgtggtgtatttgtagca
caattagatgtttcgactgtcgattttgctaagctagattctatcatccgtacacatgta
ccaagtggacaggagatacataaggaagtatcgcctgcccgtcaatttttagaatttgaa
ggtaaacaatttcgagcaagcggtttgaaagatgagtataccaatctgtcattaggtact
cttggtggtggcaatcattttatcgaacttgccaaggatgaagaagagcagcactattta
ctaattcatacaggctcacgctatgtaggagcaaaagtagctaattggcatcaaaaaaga
gcatatgaaaatttacgtcgacaagatttgacggaaaaaatagcagagcttaaacgacta
gggcgagaaaaagatatacaaccaatgatcctcgcctataaagaacaaaatcctgctgtg
ccgaaagagttagcctatttagagggtgactatttccatgactatattcatgatatgaag
attgctcaacaatttgcacgtatgaatcgttggactattgccgaaataatcgctaaacag
atggggtggcatttcacggatacatttgatacgattcataactatattgatactgaaaca
atgacacttcgcaaaggggctgttcgagccaataaaggagaaaagctagttattccgatg
aacatgcgcgatggatcacttatttgtattggaaaaggcaatgcagaatggaattattca
gcgccacatggagcagggcgtatgttctcacgacgagctgctaaaaaagcattgaatatg
aacgattttaaagacacgatgcagggcatttggacaacatccgtcaatgaggaaacattg
gatgaggcaccgatggcttataagccaatgtcagaaataatatcggccataggagaaact
gtagatattgtcaaagtcattaaacctgtctataattttaaagcgagtgaggcagcaaaa
ccgtatgagagaaagggcaaagtggatgattag
DBGET
integrated database retrieval system
