Lysinibacillus irui: OU989_18195
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Entry
OU989_18195 CDS
T09550
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
liu
Lysinibacillus irui
Pathway
liu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
liu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU989_18195 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
liu03019
]
OU989_18195 (rnr)
03016 Transfer RNA biogenesis [BR:
liu03016
]
OU989_18195 (rnr)
Enzymes [BR:
liu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OU989_18195 (rnr)
Messenger RNA biogenesis [BR:
liu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OU989_18195 (rnr)
Transfer RNA biogenesis [BR:
liu03016
]
Prokaryotic type
tRNA degradation factors
OU989_18195 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1CSD-TOTE-2
S1_RRP5
AEP_C962R
Motif
Other DBs
NCBI-ProteinID:
WDV06170
UniProt:
A0AAJ5RNA2
LinkDB
All DBs
Position
complement(3606419..3608887)
Genome browser
AA seq
822 aa
AA seq
DB search
MKDQKDTLQSRLLDFFGQDDYKPLTVGEIEEEFGFEDAEEFKELVKTLVRMEGQGLVVRS
RSNRYGLPERMNLLRGKFIGHAKGFGFVTPDIEGMDDVFIPPHEINGAINGDIVLIRVLK
ESFGDRREGTVTKVVERGQTSFVGTFQANRGFGFVVLDDKKLPMDIFIAKGDTLGAVDGH
KVVVEVATWPEDLKSATGYITKILGHKNDPGVDILSILYKHDIPPEFPDEVITAAQRVPD
EITEADLEGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSYYVTQGS
VIDLEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDANGNVISHEI
FQSVIKTTERMTYRDVYKILEEQDEALIKRYEPLVPMFKNMAELSNILRRKREMRGAIDF
DFKESKVIVNEEGWPVDIELRERTVAEKLIEDFMLAANETVAEHFHWMNVPFLYRIHEDP
KPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRSMQQAKY
YPESLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYIINKDTSRETIAQWSMAMDEIAD
HTSERERRAVDAERDTDALKKAQYMSDKIGEEFEGIVSSITNFGIFVELPNTIEGLVHIS
NMTDDYYRFDDRQMIMIGERTNRQFRIGDEVTVRVANVIIEESSIDFEIVGMVTSYGRTR
KAAPTVIHARKNYSDNKGGSSRRSTRSDEERGSRGGSRRGRRQEEERGSRSSKQGERRES
DRDPRGRRKDDSSPGPKKRVKQKQKFYEGIAKKGKKKKSKRK
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaccaaaaagatacactacaaagtcgtttactcgatttcttcggtcaagatgat
tataaaccattaactgttggtgaaatcgaggaagaattcggctttgaggatgcggaggaa
tttaaggagcttgtaaaaacattagtccgcatggaaggacaaggcttagttgttcgttca
cgctccaatcgttatggcctaccagagcgtatgaatttactaagaggtaaatttattggg
catgcgaagggcttcggctttgtaacgcctgatattgagggcatggacgatgtgttcatt
ccaccacatgaaattaatggtgccattaatggagacatcgttttaattcgtgttttaaag
gaatcattcggagatcgtcgcgaaggtactgtaacaaaggtcgttgaacgtggtcaaaca
agctttgttgggacattccaagcaaatcgaggcttcggctttgttgtcctagacgataaa
aagctaccaatggatatctttattgctaaaggggatacattaggagctgtcgatggacat
aaggttgttgttgaggttgcgacatggcctgaggatttaaaatcggcaaccggctatatt
acaaaaattttaggccataaaaatgatccgggtgtggatattttatcgattttatataag
catgacatcccacctgaattcccagatgaagtcatcactgcagcacaacgtgtaccagat
gaaattacagaggctgatttagaaggtcgccgtgatttacgacatgaaacaattgtgacg
attgatggtgcagatgcaaaggacttggatgatgcggttaccgtaacgaaaaatgtcgat
ggtacttacaagcttggcgtacatattgcagacgtaagttattatgtaacgcaaggctcg
gttattgaccttgaagcttacgaccgtgcgacaagtgtttatttaacagaccgtgttata
ccgatgattccacatcgattatcgaatggtatttgttctttaaatccacaggttgaccgt
ttaacgctatcctgtgaaatgatcattgatgcgaatggtaatgtgatttcacatgaaatt
ttccaaagtgtgattaaaacgacggaacgtatgacgtatagggacgtttacaagatttta
gaggagcaggatgaggcgctaattaaacgctatgagccacttgttccaatgtttaaaaac
atggcagagctctccaatattttacgtcgtaaacgtgaaatgcgaggagccatagacttc
gactttaaagaatctaaagttattgtaaatgaagaaggatggcctgtagatattgaatta
cgtgaacgtacagtagccgagaaattaattgaagatttcatgctagctgccaatgaaacc
gtagcagagcacttccactggatgaatgtaccgttcctataccgtattcacgaagatcca
aagcctgaaaagcttcaacgcttctttgaatttgtcacgaatttcggtattttaattaaa
ggtacgggtaataccgtccatccaaaagcgttacaggatgtattgaaagcaattgaaggg
atgccagaggagcctgttatttcaacgatgctattacgctcgatgcagcaggcaaaatat
tatccagaaagccttggtcactttggtttatcaacggatttctatacacacttcacatca
ccaattcgccgttatcctgatttaatcgtacaccgtttaattcgtacgtatataattaat
aaggatacatctagagaaacgattgcccagtggagtatggcaatggatgaaattgctgat
cacacatctgaacgcgaacgccgtgctgttgatgcagaacgtgatacagacgctctgaaa
aaagcacaatatatgtccgacaaaattggcgaagaattcgaaggaattgtttcatcgatt
acaaacttcggtatttttgtggagctaccaaacacgattgaaggacttgtccatattagc
aatatgacagatgattactaccgcttcgatgatcgtcaaatgattatgatcggtgaacga
acgaatcgccaattccgtattggtgatgaggtgaccgttcgtgtggctaatgtcattatt
gaggagtcatcgattgactttgaaatcgttggaatggtaacttcatatggacgaacacgc
aaagcagcacctactgtaatccatgcacgaaaaaattacagtgataacaaaggtggcagc
agtcgcagaagtacacgcagtgatgaggaacgaggcagtcgtggtggtagtcgaagaggc
cgtcgccaagaggaagaaagaggaagtcgaagcagcaaacaaggtgaacgccgtgaaagc
gaccgtgatccacgtggacgccgcaaagatgactcaagccctggacctaaaaaacgcgtg
aaacaaaagcaaaagttctatgaaggcattgctaaaaaaggcaaaaagaaaaaatcaaaa
cgtaaataa
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