Lysinibacillus irui: OU989_20105
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Entry
OU989_20105 CDS
T09550
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
liu
Lysinibacillus irui
Pathway
liu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
liu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU989_20105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
liu03019
]
OU989_20105
03009 Ribosome biogenesis [BR:
liu03009
]
OU989_20105
Enzymes [BR:
liu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OU989_20105
Messenger RNA biogenesis [BR:
liu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OU989_20105
Ribosome biogenesis [BR:
liu03009
]
Prokaryotic type
rRNA helicases
OU989_20105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WDV06501
UniProt:
A0AAJ5RK54
LinkDB
All DBs
Position
complement(3988687..3990201)
Genome browser
AA seq
504 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNR
PQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAERQTLL
FSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDILSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTSDEALEGQQRLAVETLEGLIANNNLGDYRTFAAELLENHEAIDVVAAALR
SLTKEPDDTPVTITEERPLPMRRERSSNNRGGGDRGRSNRSYGGRRDNARSGDRRNSRRE
GGRREGGRREGGQGRSRSPRRHED
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagcgaatctacattacgctcagtaaagcgtatg
ggatttgaagaagcaacaccaatccaagaaggtactattcgttttgcgattgaaggccgt
gacgtattaggtcaagcacaaactggtactggtaaaactgccgctttcgggattccacta
attgaaaaaatcgatccaaaaaaccctaatattcaagcgttagtcatcgcaccaactcgt
gagttagctattcaagtttctgaagagctatataaaattggttatgacaaacgcgtaaaa
ttattatcagtttacggaggtcaagaaattggccgtcaaattcgtgcactgaaaaataga
cctcaaatcattgttggtacgccaggacgtattattgatcatattaatcgtcgtacgtta
aaattagaagatgttcaaacattagtattagatgaagcagatgaaatgttaaacatgggc
tttatcgatgatattaattcgatcttagaaaacgtgcctgctgagcgtcaaacattattg
ttctcagcaacaatgccaccagcaatccgtaaaattgcagaaacatttatgcgcgatcca
gaaattgtgaaaattaaagcgaaagaattgactgtagacaatattgatcaatattttgtt
aagtcagctgaacgtgaaaagttcgatattttatctcgtcttttaaatgttcaccagcca
gagcttgcgattatttttggtcgtacaaaacgtcgtgtagatgagcttgcacaggcccta
tcaattcgtggatatttagctgaaggtattcatggtgatttaagtcaagcgaagcgtatc
tctgtattacgtcaatttaaagaaaataaaattgatattcttgttgcgacagatgtagca
gctcgtggacttgatatttctggtgtaacacatgtttacaactttgatatccctcaagat
ccagaatcttatgttcaccgaatcggacgtactggccgtgcgggtaaatcaggtcttgct
gtaacatttgttactccacgtgaaatgggttacttacgtattgtagaagaaacaacgaaa
aaacgtatgacaccacttcgtccaccaacatctgatgaagcattagaaggtcaacaacgt
ttagctgtagaaacacttgaaggtcttattgctaataataatttaggtgattaccgcaca
tttgcagcggaattacttgaaaatcatgaagcaattgatgttgtggcagctgctcttcgc
tcgttaacgaaagagcctgatgatacaccggtaacaatcacagaagaacgtccattacca
atgcgacgtgaacgttctagcaataatcgtggtggtggtgaccgtggccgcagtaaccgt
agctatggcggacgtcgtgacaatgctcgcagtggagatcgccgcaatagccgtcgcgaa
ggtggtcgccgtgaaggcggacgtcgtgaaggtggacaaggtcgttctcgttctccacgc
cgtcacgaagactaa
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