Listeria ivanovii subsp. ivanovii PAM 55: LIV_0126
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Entry
LIV_0126 CDS
T01623
Name
(GenBank) Putative ATP dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LIV_0126
09124 Replication and repair
03420 Nucleotide excision repair
LIV_0126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
liv03021
]
LIV_0126
03036 Chromosome and associated proteins [BR:
liv03036
]
LIV_0126
03400 DNA repair and recombination proteins [BR:
liv03400
]
LIV_0126
Enzymes [BR:
liv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LIV_0126
Transcription machinery [BR:
liv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LIV_0126
Chromosome and associated proteins [BR:
liv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LIV_0126
DNA repair and recombination proteins [BR:
liv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LIV_0126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
Helicase_C
Vip3A_N
Motif
Other DBs
NCBI-ProteinID:
CBW84609
UniProt:
G2Z9E5
LinkDB
All DBs
Position
136551..138890
Genome browser
AA seq
779 aa
AA seq
DB search
MKTVKISVRRLVEFVLRSGSIDSRMTSSNRALEGTKIHQLLQQTAGEEYQAEVSLKLDRT
VEDVAFSIDGRADGIINERTIDEIKTTETVMEEITENFQPLHWAQLICYGFMLAEKADFS
EVTLQLTYYQVADEEIKQFRRVMSREEMGAFVDDLLSKYAVWAKMSVAWEMKRNKTIQEL
VFPYSSYRRGQRELSIAVYRTAISGEDLFCEAPTGIGKTMSTLFPSMKAMGEGKTDKLFY
FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLN
EALFDLLGQEEAISRSVIERYARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRF
FSEGPGKYTFLVDEVHNLVDRARSMFSATLRKSLVMQVKRQLDKKLHKRLWKTVNEMNKV
MISINKKLVEADETIYVNKAALTEWNESVLKFTFVAKEWLPKNAQSESQTDVLELYFEGL
RYMKIAELYDEHYTTQITRHRSDLEIKQLCLDPAFLLSEKLKLGSNSVLFSATLRPIDYY
TNVLGGENDTSRIVFSSPFEQKNMRLLVADNISTKYQMRHQSLATVVESLNSFISGKKGN
YLFFFPSFQYLQIVYELFKAKYPNIIVQKQENSMDEVRREEFLEVFKVGNSETLVGFCVL
GGVFSEGIDLRGERLIGAAIIGVGLAQLNPESDLIKDYYNETIGRGFDYAYQIPGMNKVL
QAVGRVIRDETDRGAVLLIDERFSASRYRALFPAHWNHAKIVKNTQEITQQVSEFWRND
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacggtaaaaatttcagtacggcgtttagtggaatttgttcttagaagtggcagt
attgatagccgaatgactagttctaatcgagcgctagaaggtacgaaaattcatcaattg
ctccaacaaacagcaggagaagaatatcaagcagaagttagtttaaaactcgaccgtact
gtggaggatgtagctttttcgatagatggtcgtgcggatgggataattaatgagcgaaca
atagatgagattaaaacaacggaaaccgtaatggaagaaattaccgaaaatttccagcca
cttcattgggcgcaacttatttgttacggctttatgctcgctgaaaaagcagatttttct
gaggtcacgcttcaattaacctattatcaagtagctgatgaagaaataaagcaatttaga
cgtgtaatgagtcgagaagaaatgggtgcttttgtagatgatttgctttccaaatatgca
gtttgggcaaaaatgtcagttgcttgggaaatgaaacggaataagacaattcaggagttg
gtatttccttatagtagttataggcgcggtcagagagaactttcgattgcggtgtaccgg
acagcaatatcaggagaggatttattttgcgaggctccaactggaattggcaaaacaatg
tcaaccctatttccttcaatgaaagcaatgggtgaggggaagacggataaacttttttac
tttacagcgaaaaccattacgagacaggtagcagaagatgcgctagatgaaatgcggcgg
aaggggttagcggcgagaagtgttacgattacagcgaaagataaaatatgctttttagat
gagcgcaagtgtgaaccggatcattgccaatttgcaaggggctattatgaccggttgaat
gaggctctatttgatctgcttggacaggaagaagcaataagtcggtctgttatagagcgg
tatgcccgaaaatacactctttgcccatttgaattgtcgcttgatgtagcgctgttttgt
gatgtgattgtttgtgactacaattatttgtttgatccagtggtttatttaaaacgcttt
tttagtgaaggtccaggaaagtacacgtttctagttgatgaagtgcacaatttagtagat
cgagcgcgttcgatgttttcggcgacgctgcgaaaatcactcgttatgcaagtaaagcga
cagttggacaaaaagctacacaagcggctttggaaaacggttaatgagatgaacaaagta
atgatttcaatcaacaagaaattagttgaagcggacgagacaatttatgtaaacaaagca
gcactgacggaatggaacgagtcggtattaaagtttacgtttgttgcaaaagaatggctg
ccaaaaaatgcgcaatcggaatcacagaccgatgtgttggagctttactttgagggcttg
cgttatatgaaaattgctgaactttatgatgaacactatactacgcagattacgcgccat
cgttcggacttagaaatcaaacaactatgtttagatcctgctttcctgctatcagaaaaa
ctaaaactagggtctaattcagtacttttttcagcgacgcttagaccaattgattactat
acaaatgtacttggcggagaaaatgatactagtcgaatagtttttagttctccgtttgaa
caaaaaaatatgcgtttattagtggcggataatataagtaccaaatatcaaatgcgtcat
caaagtttagcaacagtagttgaatcactaaattcgtttatatcagggaaaaaaggaaac
tatttatttttctttccttcttttcagtatttgcaaatagtgtatgagttatttaaagcg
aaatacccaaatatcatcgtacaaaagcaagagaattcaatggatgaagtgcgacgtgag
gaatttttagaagtattcaaagtagggaattcagagactctagtaggtttttgtgtttta
ggcggtgttttttcagaaggaatcgatcttcgcggtgaaaggttaattggagctgcgatt
attggggttggacttgcgcaactaaatccagagtcagatttaattaaagactattataat
gaaacaataggccgagggttcgattatgcgtatcaaattcctgggatgaataaagtgctt
caagctgtgggacgggtcattcgcgatgaaactgatcggggagccgtattactaatagat
gaacgtttttcggcaagtcgttatcgggcattatttccggctcactggaatcatgcaaaa
atagtcaaaaatacgcaagaaatcacgcagcaagtaagcgaattttggcgaaatgattag
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