Listeria ivanovii subsp. ivanovii PAM 55: LIV_0184
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Entry
LIV_0184 CDS
T01623
Symbol
mfd
Name
(GenBank) Putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LIV_0184 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liv03400
]
LIV_0184 (mfd)
Enzymes [BR:
liv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LIV_0184 (mfd)
DNA repair and recombination proteins [BR:
liv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LIV_0184 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
CBW84664
UniProt:
G2Z9J9
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All DBs
Position
201271..204810
Genome browser
AA seq
1179 aa
AA seq
DB search
MKGLQQLIYEQTDIRAVLKALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLMDSDRLFLYPADELISSELSISSPELRGQRVEALDFLISGKSGIVIV
PVAGLRKMLPPVSLWKHFNVSIVEGEEIDPEVLRQKLVTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFHLLPATEIILDQSYYPDIV
KRLEKKMMLTLNELKEKEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
FPKNTAILLDEFGRILETEESLEKEEAEWQTETLSRMETVRDVRVSHSFKKLLDENHSPK
IYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNIERA
EKMQQTLADYDMESLLLKKESDVPKYGQVQFVVGTFQNGFELPLAKVAIISESELFNKKV
KKVKKHQKLSNAERIQSYSELKVGDYVVHINHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGTEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSPDEEMQREFEDAFPYQETDDQLRSIAEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGVKSGTVDIVVGTHRLLSKDVEYHDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVETITQKADEISAMVPDARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIV
PVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIEVLNDLEELQSDMIDRFGEYPEEVEYL
FTMTELKVHALEVGIESVKQEQNKITILFSESGTAGIRGDIVMQIIGEFGRMIGVGMEGA
QLKITVNVQNKPLKEWLYQIKSLAEKLRGALKEEVPSEN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggattacaacaattaatatatgaacaaacagatattcgagcagtcttaaaagcg
ctcgatgaaaaagaaaaagcacaacttgttactgggcttactgggtcttcacgtgcgtta
tttgcaagtgtagtggaaggtgcatctaaacgaccagttgtttttgtgacgcataattta
tatcatgcgcaaaagctatatgatgatttattatctttgatggattcagaccgtctgttt
ttatatccggccgatgaactaatatcttccgagttaagtatttccagtccggaactcaga
ggtcaacgagttgaagcgttagattttttgatttctggaaaatctggaatagtgattgtt
ccggttgcagggctcagaaagatgctcccgccagtatctctttggaaacactttaatgta
tccatcgtagaaggcgaagaaattgatccagaagttttgcgccaaaaattggttaccatg
ggctatacgatgagtgggatggttaacacgccaggagaatttagcgttcgtggtgggatt
atagatatttacccaattacggaagaatttccaattagaatagaactatttgataccgaa
gtggattcgcttcgtttctttgatgtcgaaacacagcgctctacctctcgtgtagaagaa
ttccacttactaccagcgacagaaatcattttagatcaaagctattacccagatattgtc
aaacgtcttgagaaaaaaatgatgcttactttgaatgaattaaaagaaaaagaagacaaa
caagcacttgttgaaaatttagaagaagatttagaaatgttgcgttctggtgtaaaacca
gatatgtttttcaaatacataggtttagcctatcctgatccagcatcactttttgactat
tttccgaaaaatactgcaattttactagatgaatttgggcgtatattagaaaccgaagaa
agcttagaaaaagaagaagcagaatggcagacggagacactaagtcgtatggagaccgta
cgtgatgttcgggtaagccattctttcaaaaaattactcgacgaaaatcactcgccaaaa
atctatttatccctttttcaaaaacaaatggcgagcatgcgggtatcgaaaacaacgaat
attgtctacaaacagatgcaacaatttcatggtcaaatgaatgtgctcaaaacagaatta
gaaagctggcataaaaacaattatgcggtagtcatcttagcacctaatatagagcgtgca
gagaaaatgcaacaaacactagcggattatgacatggaaagcctgcttctaaaaaaagaa
tctgacgtccctaaatatgggcaggttcaatttgtcgttgggacattccaaaatggcttt
gagttaccacttgccaaagtagcgattattagcgaatcagaactcttcaataaaaaagta
aaaaaggtaaaaaaacaccaaaaactatctaatgctgagcgaattcaaagctattccgaa
ttaaaagtgggcgattatgttgtgcatataaaccacggtattgctcgctatgttggaatg
gaaactttagacattaatggcgtgcataaagattatcttcttctcgtttatcaaggtgaa
gataaattgtttatcccagtagaccaacttgacttagtgcaaaaatatgttggcgctgaa
gggaaatccccgagattaaataaacttggtggcacggaatggaaacgcgtgaagaaaaaa
gtgcaagcttccgtccaggatattgcagacgatttaatcaagctatacgcggaacgagaa
gcagaaaaaggttatgcattcagcccagatgaagaaatgcaacgcgaatttgaagatgct
ttcccgtaccaagaaaccgacgaccaattgcgctctattgcagaaatcaagaaagatatg
gaacggccacgcccaatggatcgtttgcttgttggtgatgttggctacggtaaaacagaa
gttgcgcttcgggctgcttttaaagcaattatggatggcaaacaagtagccttcttagtt
ccgacaactatcctggctcaacagcattttgaaacaatgaaagagcgattccaaggtttt
ccaattgaaatcgggcttttaagtcgttttcggacaaaaaaacaacaaacagaaacgtta
aaaggggtgaaaagtggaacagtagatatcgttgtcggcacacaccgactattatcaaaa
gatgttgagtaccatgatttaggtttgcttattgtcgacgaagaacaaagatttggtgta
acccataaagaaaaaattaaacaaatgcgttcaaaaatagatgtattaacactaacagcg
actccaattccacgaacactacacatgtcgatgctaggtgttcgtgatttatccgttatc
gaaaccccgccagcgaatcgctttccagttcaaacatacgtagcggaacaaaataatgtt
cttgttagagaagcgattgaacgagaactcgcgcgcgatggacaagtctactacctttac
aaccgggtagaaacaatcacacaaaaagcagatgaaatttctgcaatggttcccgatgcc
cgagttgccatcgcgcatggacaaatgggtgaatctgaattagagtcggttattttgagt
ttccttgaaggtgagtttgatgttctagtaaccactactattatcgaaaccggcgtggat
attccaaatgtgaatacactcttcgttcaagatgctgatcgaatgggcctatcacaactg
tatcaattgcgcggacgggtagggcgctggaatagaattgcatatgcttactttatgtac
caaaaagataaaattcttcgtgaagaagcggagaaacgtttgtcagccattaaagaattt
accgaattaggctctggtttcaaaattgcgatgcgcgatttatctatccgtggcgctggt
aatatccttggggcgcaacaacacggctttattgattctgtcggttttgacctttattcg
caaatgctaaaagaagcgattgaagcgaaaaagccaaaagaagaacaaaagcaaattgtg
ccagtcgaaattgatatccaagcagatgcctatataccagaatattacattacagatggt
cgccaaaaaatcgagatgtacaaacgtttccgtaatatagaagtattgaatgatttggaa
gaactgcaaagtgatatgattgaccgttttggtgaatatccagaagaagtcgagtattta
ttcacgatgacagaacttaaagtccatgcgcttgaagtcgggattgaatcagtcaaacaa
gaacaaaacaaaattactatattattttccgaaagtggcacagccggaattcgtggtgat
atcgtgatgcaaatcattggcgaatttggtcggatgattggtgttggaatggaaggtgcg
caactgaaaatcaccgtaaatgtccaaaataaaccattaaaagaatggctctaccaaatc
aaaagcttagctgaaaaacttcgtggcgctttaaaagaagaagtaccttccgaaaactaa
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