Listeria ivanovii subsp. ivanovii PAM 55: LIV_0804
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Entry
LIV_0804 CDS
T01623
Name
(GenBank) Putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIV_0804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
liv03019
]
LIV_0804
03009 Ribosome biogenesis [BR:
liv03009
]
LIV_0804
Enzymes [BR:
liv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LIV_0804
Messenger RNA biogenesis [BR:
liv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LIV_0804
Ribosome biogenesis [BR:
liv03009
]
Prokaryotic type
rRNA helicases
LIV_0804
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
NABP
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
CBW85290
UniProt:
G2ZDG5
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All DBs
Position
863719..865287
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AA seq
522 aa
AA seq
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MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPM
IHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKK
PQIVVGTPGRILDHINRRTLKLDNVETIVLDEADEMLNMGFIDDIETILKEVPAERQTLL
FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAP
ELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTK
KRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLK
MLAKEPDKTPVHITEERPLPSRGGGGYKGKGGNGKGGKGGGGYRGGSGKGGSYRDRNNSG
KGRRSGGGSGNGSGGGNRDRRGNGEQRPSGGGNKGSYSQKSK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaattttcggagttcggactggacgaaaaaattgtaaaatcagtaaatcggatg
gggtttgaagaagcaacgccaatccaagaaaaaacaattccactaggactagcaggtaaa
gacttaatcggacaagcacaaacaggtactggtaaaacagccgcttttggtctaccaatg
attcacaaaattgaccaaaaaagtaataacgtacaagctttaattatcgctccaacgcgg
gaacttgcaatccaagtttcagaagagctttataaacttagctatgacaaacatgtacgt
gtgctagcggtttacgggggtagtgatatcagccgtcaaatccgttcacttaagaaaaaa
ccacaaatcgtagttggtacgccaggacgtattttggatcatattaaccgtcgcacactg
aaactagacaacgtggaaacaattgtactagatgaagcagacgaaatgctaaacatgggc
ttcattgacgatattgaaactatcctcaaagaagtaccagcagaacgtcaaacattacta
ttttctgcaacaatgcctgatccaattcgccgtattggtgaacgtttcatgcatagccca
gaacttattcgtattaaagcgaaagaaatgactgcactattaatcgaacaattcttcgta
aaagtgcacgaaaaagaaaaatttgacgtattatctcgtttgctagacgtacaagcacca
gaacttgcgattgtttttggtcgtacaaaacgtcgcgtagatgaattatctcgtgcgctt
gatatgcgtggttatgtagctgagggtatccacggcgacttaacacaagcaaaacgtatg
agcgtactgcgcaaatttaaagaaggaaaaattgatgttctagttgcaacagacgtagca
gcacgtggacttgatatttccggcgtaacacatgtatataactatgacatccctcaagat
ccagaaagctatgttcaccgtattggtcgtactggtcgtgctggtaaagaaggtatggca
attacattcgtacaacctcgtgaaatgggttacctgcgtatcgtagaagaaacaacgaaa
aaacgtatgcagccacttcaagctcctacttgggacgaagcttttgcaggtcaattacgt
gtagcaacagaaaaaattcaagaagcaattacagaagaaaatcttgctgattacaaaacg
tttgctaatgaattattagaaaaatatgatgcaacagacatcgcagcagcaatgcttaaa
atgctagctaaagaaccagacaaaacaccagttcatattaccgaagaacgcccattacca
tctcgtggtggtggcggctacaaaggtaaaggtggaaatggtaaaggcggcaaaggtggc
ggcggctatcgcggcggaagcggcaaaggcggaagctatcgcgatcgtaataacagtggc
aaaggtcgtcgtagtggcggcggttccggaaacggttctggcggtggaaatcgcgatcgt
cgtggaaacggcgaacaacgtccaagtggtggcggaaacaaaggaagctactcacaaaaa
tctaaataa
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