Listeria ivanovii subsp. ivanovii PAM 55: LIV_1194
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Entry
LIV_1194 CDS
T01623
Name
(GenBank) Putative ATP-dependent RNA helicase (DEAD motif)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIV_1194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
liv03019
]
LIV_1194
03009 Ribosome biogenesis [BR:
liv03009
]
LIV_1194
Enzymes [BR:
liv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LIV_1194
Messenger RNA biogenesis [BR:
liv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LIV_1194
Ribosome biogenesis [BR:
liv03009
]
Prokaryotic type
rRNA helicases
LIV_1194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
CBW85680
UniProt:
G2ZF77
LinkDB
All DBs
Position
1251752..1253164
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AA seq
470 aa
AA seq
DB search
MNNLNLSEEIKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQ
VIWEENKPQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHI
VVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFSA
TMPEEMQDLIKRYQDDPIVIEMAAEKTNPITHIEMQTENKEKTLQDVLITENPDSAIIFC
NTKNQVDELSDLLQVNTAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDVENVT
LVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDMEDMLKITIEKKRKPT
IIEVKASEEAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRAVDFVGTISKLEG
ITSEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRQLKVNEARKR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttaaatttaagtgaagaaattaaacgagcaattaatgaactaggatataaa
gaagcgacacctgttcaaaaggaagttatccctgttgcattaacaggaaaagacattgtg
gcaaaatcacaaacaggaagtggtaaaacagccgcatttgcgattccaattgctgaacaa
gtcatttgggaagaaaacaaacctcaagcattaattatcgttccaactagagagctagct
atgcaggttaaaacggaatgcactaatataggtagatttaaacgcattaaagctgcagca
atttatgggcaatctccctttgctaaacaaaaattagaattaagccaaaaaaatcatatc
gtcgttggaaccccggggcgtttgttagaccatattgaaaaaggcacacttaacgtggat
aaagttgcttacttagttttagatgaagtagacgaaatgttaagtatgggattcattgat
caagtagaagatattttgcagtttttacctaaaaagcgccaaaatctattcttttcggca
acaatgccagaggaaatgcaagatttaatcaaacgatatcaagacgatcccattgttatt
gaaatggcagcagaaaaaacaaacccaatcacacatatcgaaatgcaaacagagaataaa
gaaaagacgctccaagatgttttaatcacagaaaatccagatagtgcgattattttttgt
aacactaaaaatcaagtagatgaactaagtgacttactacaagtaaatacagctaaaatc
catggaggtttacgacaagaagagcgtttccgtgcgatggatgattttaaaagtggcaaa
tcgcgctttttaattgcaacagatgtagctggtcgtgggattgatgtggaaaatgtcacg
ctagtaattaattatgacttaccaatcgaaaaagaaaactatgtgcaccgaatcggtcgt
actggtcgcgcgggaaacagtggaaaagcaatcagttttgtcaaaacaaacgaaaatccc
ttacttagagatatggaagatatgctaaaaatcacgattgaaaagaaacgtaaaccaacc
attatcgaagtaaaggcaagcgaagaagctttccgcaagaaacaacaaaaacgtccaacc
atcaaaaaagctcgtggcgaaaagctgaataaaaatattatgaaactgtactttaatggc
gggaaaaagaaaaaaattcgagctgtggattttgtaggaaccatttcaaaattagaagga
attacatcagaagatatcggtattattactatagaagatcatgtgtcatttgtagaaatt
cttaatggtaaaggaccagctgtgcttgaaatgatgcgttcgcgtaaagtaaaaggtaga
cagctaaaagtgaacgaagcaagaaagcgataa
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