Listeria ivanovii subsp. ivanovii PAM 55: LIV_1271
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Entry
LIV_1271 CDS
T01623
Symbol
polC
Name
(GenBank) Putative DNA polymerase III (alpha subunit)
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv03030
DNA replication
liv03430
Mismatch repair
liv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LIV_1271 (polC)
03430 Mismatch repair
LIV_1271 (polC)
03440 Homologous recombination
LIV_1271 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
liv03032
]
LIV_1271 (polC)
03400 DNA repair and recombination proteins [BR:
liv03400
]
LIV_1271 (polC)
Enzymes [BR:
liv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LIV_1271 (polC)
DNA replication proteins [BR:
liv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LIV_1271 (polC)
DNA repair and recombination proteins [BR:
liv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LIV_1271 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
tRNA_anti-codon
HHH_6
RNase_H_2
Rv2179c-like
HHH_3
DEDDh_C
Peripla_BP_1
Motif
Other DBs
NCBI-ProteinID:
CBW85753
UniProt:
G2ZFN2
LinkDB
All DBs
Position
1326682..1331016
Genome browser
AA seq
1444 aa
AA seq
DB search
MTAKEEEKQERFQLLMTQIGLEDVVTYEEFTKEAKIEKLVADKKNKTWQFHLHVPQIFPA
ALFHMMDVGMKRAFSEIATTEMQIVPENQTINETLIQDYWNLIVEPISKQSPMIGKLLLE
QKPTFKEPHFIEIAVHNDMEETTIQQRFQAKIIESYGSAGFPRLALKTHILDQSETEEYK
AFAQAKIEEDQKKAAEAVQVMQKRQVEAQNGSASAAPLSGPFQIGYKIKDDEEIKRLGDV
YDEERRITVQGLIFATEIRELRSGRSLLQFKITDYTSSMIIKMFSRDNEDAAMFQNLKKG
MWVKVRGSVQNDTFVRDLIMMAQDINEIAGVKRLDKAEEKRAELHLHSPMSQMDATSSVD
SLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIFGIEANLIDDGVPIAYNDQH
ILLKDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT
GITDDMVKGSDPIEVVLQRFKEWSADDILVAHNASFDMGFINTAYEKVGIPKAKNAVVDT
LELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEYH
DSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKL
REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEIQPKPVYAPLIERELVRDEKAL
EEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGGANPLNRAELPDVHFRS
TDEMLKEFAFLGEEKAKEVVVTNSNLVVDWMEELKPIKDELYTPKIEGAEDEVRNMSYNM
AHQLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVGSRGSVGSSF
VATMTEITEVNPLPPHYLCPNCQDSEFFDDGSIGSGFDLPDKDCPHCGTAYQKEGQDIPF
ETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNY
ERDMNMTIRGAEIDRLVAGCTGVKRTTGQHPGGIIVIPNYMDVYDFTPVQFPADATDSEW
KTTHFDFHSIHDNVLKLDILGHDDPTAIRMLQDLSGIDPKTIPTDDPDVMKLFGSTESLG
VKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVWLGNAEELIK
NKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESVRKGKGLTEEMEEAMMANNVPLWY
IESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEA
VKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLI
PPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQRGKVSKTIIQYMDDQGCLEGLPDQNQ
LSLF
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgactgctaaagaggaagaaaaacaagagcgatttcagctgctaatgacacaaattggc
ttggaagatgtagttacttatgaagagtttacaaaagaagctaaaatagaaaaactagta
gctgataaaaaaaataagacatggcaatttcatttgcatgtcccacaaatttttccagcg
gcactttttcatatgatggatgttggaatgaaaagggcttttagtgaaatcgccacaaca
gaaatgcaaatagtccctgaaaaccaaaccattaacgaaacactcattcaagactattgg
aatttaattgtagagccaattagcaaacaatctccaatgattggcaaattactcttagaa
caaaagccgacatttaaggaaccacattttattgagattgccgtgcataacgacatggaa
gaaacaactattcaacaaagattccaagcaaaaattatcgaaagttatggaagtgccggg
tttccacgtttggcactgaaaacacatattttagaccaatctgaaacagaagaatataaa
gcatttgcacaagctaaaatagaagaagatcagaaaaaagcagccgaggcagttcaagta
atgcaaaaacgtcaagtagaggcacaaaatggaagtgcctctgcagcaccactttcaggt
ccattccaaattggctacaaaattaaagatgatgaggaaatcaagcgcctcggagatgtt
tacgatgaagaacgacgcataactgttcaaggtttgatttttgcaacggaaattagagag
ctccgcagtggtcgtagtcttttacaatttaaaattaccgattacactagctcgatgatt
attaaaatgttttctcgtgataatgaagatgcagcaatgtttcaaaatttgaaaaaaggc
atgtgggtgaaagttcgcggtagtgttcaaaatgatacttttgttcgggacttgatcatg
atggcgcaagatataaatgaaatcgctggagtgaagcgtcttgataaagcggaagagaaa
cgtgcagaacttcatctacattcaccaatgagccaaatggatgcgacatcttccgttgat
tcactcttcaaacaagctgcggattgggggcataaagcaattgcgattacggatcactct
gtagcacaatctttcccggaagcatatggggctgggcaaaaatatggattaaaagttatt
tttggtatcgaagcgaatttgattgatgatggggtgccaatcgcatataatgaccaacat
attctcctgaaagatgccacttattgtgtatttgatgtggaaacaacagggctatcggct
gtttatgatacgattatcgaattagctggagtaaaaatgaaaaacggtgaaatcattgat
aaatttgaagcattcattgatcctggacatccactttctgcaacgacgattaatttaaca
ggaattacggatgacatggtgaaaggttctgatccgattgaggttgtgcttcaacgattc
aaggaatggagcgccgacgatattttagtggcccacaatgcctcttttgatatgggattt
atcaataccgcttatgaaaaagtaggaattccaaaagcgaaaaatgcggtagtagataca
ctggagctagctcgtttcctttacccacactttaaaaatcaccgtttaaatacgttaacg
aaaaagttcaatattatattagaacaacatcaccgtgctgtttttgatgccgaagctaca
gcatatttagcttggaaattaattaaagatgccaaagaaatgcacgacatcgaataccat
gattcgttaaatgattatatgggagaaggcgatgcatataaacgcgctagacctttccat
gctactatctatgctcaaacagctgttggtttaaaaaatctatttaaattaattacgatg
tctaatattaactatttttatcgtgttccacgtatcccacgttctcaactgaaaaaactt
cgcgaaggtttgattattggaacagcttgtagccaaggggaattgtttgaagcaatgatg
caaaaagggatgcaggctgccgaaaaagttgcagagttttatgactttattgaaattcaa
ccgaaaccagtttatgcgccattaattgagcgagaacttgttcgggatgagaaagcatta
gaagaaattttgaaaaatatcgttcgtgttggtgaaaaaaccgggaaaccagtagtggcg
acagggaatgtacattacaaagacccagtggacaaaatttatcgtaaaattttgattcat
tcccaaggtggcgctaacccgctgaatcgtgctgaactgccggatgttcatttccgttct
actgatgaaatgctaaaagagtttgcttttcttggagaagagaaagcaaaagaagtggtt
gtcaccaactctaatttagtagtcgactggatggaagagctaaaaccgattaaagatgaa
ctttatacaccaaaaattgaaggtgcagaagatgaagttcgtaatatgagctacaatatg
gcacaccaattatacggtgaaaaattaccagaaattgtcgaagcgagacttgaaaaagaa
ttgaaaagtattatcggccatggatttgcggttatttacttaatctcgcataaactagtt
aaaaaatcgcttgttgatggttatctagttggatcacgtggatcggttggttcttccttt
gttgccacaatgacagaaataacggaagtaaatccacttccaccacattatctctgtcca
aattgtcaagactcggagttctttgacgatggttcaattggttctggttttgacttacca
gataaagactgtcctcattgcggaacagcctatcaaaaagaagggcaagatattcccttt
gaaacattcttaggatttaaaggagataaagtacccgatattgatttaaacttttcaggt
gattaccaaccagttgcccacgcttatacaaaagaaatatttggagaagattatgttttt
cgcgctggaacaattggtacagtagcggaaaaaaccgcatttggttatgttcgtaattat
gaaagagatatgaatatgacgattcgtggggcggaaattgatcgtcttgtagctggttgt
actggcgttaagcggacaactgggcaacatccaggaggaattattgttattccgaattat
atggacgtatacgatttcacacctgtacaatttccggcggatgcgaccgattcagagtgg
aaaacaactcattttgattttcactccatccatgataatgtgcttaaacttgatatactt
ggacacgatgatccgacagctatccggatgttacaggatttaagtggtatcgacccaaaa
acaattccaaccgatgatcccgacgtgatgaaattatttggttccactgaatcacttggt
gtaaaaccagcagatattgattctaaaacagggacacttggtattcctgagtttggaaca
cgtttcgtacggcaaatgcttgaacaaaccaaaccaactactttttccgagttagttcag
atttctggtttgtctcatggtacagacgtttggcttggtaatgctgaagaactgattaaa
aataaaacatgtgagcttccagatgtaattggttgtcgtgatgatattatggttttcctg
atttatcaaggtctagaaagctctttagcctttaaaattatggaatccgttcggaaaggg
aaagggttaacagaggaaatggaagaagcgatgatggcaaacaatgtcccgctttggtac
attgaatcctgtaaaaaaattaagtacatgttcccgaaagcccatgcagcagcgtatgtt
ctcatggcagtccgaatcgcttactttaaagtgcattatccgctctacttctatgctact
tatttcactgttcgtgcagatgattttgatttgacttcgatggtaaatggaaaggaagca
gtaaaagcaacgatgaaagaagtgaacgataaaggaatggaagcttctacgaaagaaaag
aatctattaaccgttctagaaattgcgaatgaaatgcttgctcgcggtttccatttccaa
aaagtagatttgtataagtcttccgctgatgaatttattattgatggggactcacttatt
ccaccatttaatgcgattccaagtcttggaaccaacgtagcgaaacaaattgtagcagct
cgtgaaaatggtgaatttttgtccaaagaagacttacagcaacgaggaaaagtgtctaaa
acaattattcaatacatggatgaccaaggatgcttagaaggattacccgatcaaaaccaa
ctgtcactcttctaa
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integrated database retrieval system
