Listeria ivanovii subsp. ivanovii PAM 55: LIV_1408
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Entry
LIV_1408 CDS
T01623
Name
(GenBank) Putative ATP-dependent RNA helicase, DEAD-box family (deaD)
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
liv03019
]
LIV_1408
03009 Ribosome biogenesis [BR:
liv03009
]
LIV_1408
Enzymes [BR:
liv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LIV_1408
Messenger RNA biogenesis [BR:
liv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LIV_1408
Ribosome biogenesis [BR:
liv03009
]
Prokaryotic type
rRNA helicases
LIV_1408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
CBW85889
UniProt:
G2Z905
LinkDB
All DBs
Position
complement(1471539..1472846)
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AA seq
435 aa
AA seq
DB search
MTKKSRFDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFI
LPIINNVNPEKDAVQAVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAID
KLKKQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPAN
LQMLVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDKLDLLKNVL
VGSQPYLAIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV
ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL
EKMGIEFKHVDWKNKEFVTLEDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYKKKIN
YKMNEIKRRERRKKR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaaatcaaggtttgaccaatttggctttcaaccttttattgggcttgcaata
gataaattaggattttacgagccaacagaagtacaacaaaagctaatcccaggtatttta
aaaggggaaagtatcattggacaatcgcaaacaggtacagggaaaacccatacttttatt
ttgccaataattaacaatgtgaatccagaaaaagatgccgtacaagcagttattacagcg
cctagccgcgagcttgctacacaaatttataatgaaattcgcaaagtaaccaagtttagc
gaaaaagaaatcgctgttcaacttgttattggtggtacggataaacaacgtgcgattgat
aaattaaaaaaacagccacaaattattgttggaacacctggtcgtattaatgatttgatt
cgtgagcaagctttatttgttcatacagcgaaaacattagtaatcgacgaagcagacatg
acacttgatatgggattcttaaatgacgtagaccatatcgctggaaaaatgccagctaac
ttgcaaatgcttgttttctcggcaaccattccgcaaaaattaaaaccatttttaagcaaa
tacatggaaaatcctcgttatgagcacatccaaccaaaagtagctgcttctaaaacagtt
gaacaccgtattatggcgactcgtagccgtgataaattagacttactcaaaaatgtttta
gttggttcacagccttatttggcgattgtttttacaaacacaaaaacaactgccgatgaa
gtagcgaacggcttaaccgaacgcggattaaaagttgctaaaattcatggtgatgtgaat
ccaagggaacgtaaacggacaatgaaacaaatcgaaaacttagattatcagtatgtagtt
gcaacggatttagcagcacgtggtattgatattcaaggtattagccacgttgtcaattat
gaactaccagatgatctagatttttatattcaccgaactggtcgtactgggcgcgcagga
cattctggtatcgcgttaactttattcgaaccagctgatgaagatcgtctgaaccaatta
gaaaaaatgggcatcgaatttaagcatgttgattggaaaaataaagaattcgttacacta
gaagaccgtaatcgtcgggccaagcgtgaagctaaacgcgaaacagcagatccacgtgaa
attggtatgcgtaaaaaagcaaaacaaaaaggaaaaccaaattataaaaagaaaatcaac
tataaaatgaacgagattaaacgtcgggaaagacggaaaaaacgataa
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