Listeria ivanovii subsp. ivanovii PAM 55: LIV_1411
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Entry
LIV_1411 CDS
T01623
Symbol
rpoD
Name
(GenBank) Putative RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LIV_1411 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
liv03021
]
LIV_1411 (rpoD)
Transcription machinery [BR:
liv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LIV_1411 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
CBW85892
UniProt:
G2Z908
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All DBs
Position
complement(1474903..1476027)
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AA seq
374 aa
AA seq
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MSDKTQNTKPVAELNVEQVKEALIEEGKKKGILTYAKIAARLAPFTLDSDQMDEYLEHVG
EAGIEVSDDADDEDPDETELVKEETESFDLTDMSVPPGVKINDPVRMYLKEIGRVDLLTA
DEEIALAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEK
FDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDP
SPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYE
LLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL
RHPSRSKQLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaaacacaaaacacaaaaccagttgctgaactaaatgttgagcaagtaaaa
gaagcccttatagaagaaggtaagaaaaaggggattttaacttacgcaaaaatcgctgcc
agattagctccatttacactagattccgatcaaatggatgagtatttagaacacgttggc
gaagcaggaattgaagtttctgatgatgctgatgatgaagatccagatgaaacagaactc
gtcaaagaggaaacagaatcctttgatttaacagatatgagtgtaccaccaggcgtgaaa
atcaatgatcccgtgcgtatgtacctaaaagaaattggtcgagtcgatttgttaaccgct
gatgaagaaattgctttagcgaaacgaattgaagctggcgatatcgaagcaaaaggtcgc
cttgcagaagccaacttgcgtctagtagtaagtattgccaaacgttatgttggtcgtggg
atgttatttcttgatttaattcaagaaggaaatatgggactaatgaaagccgttgaaaaa
ttcgactttaacaaaggatttaaattcagtacctatgcaacttggtggattcgtcaagcg
atcacccgtgctatcgcagaccaagctcgaacaatccgtatcccggtgcatatggtagaa
acaatcaacaaattaattcgagttcaacgctcgttactacaagatttagggcgcgatcct
tccccagaagaaattggagaagaaatggatttaccaacagaaaaagttcgggaaatcttg
aaaatcgctcaagaacctgtttcacttgaaacgccgattggcgaagaagatgattcgcac
cttggagatttcattgaagaccaagatgctacttcaccttctgaccatgcagcatatgag
ttattaaaagaacaattagaagatgtacttgatacgttaacggaccgcgaagaaaatgtc
cttcgtctacgctttggtttagatgatggacggacacgcactttagaagaagttggccgt
gtatttggagtaacccgtgaaagaatccgtcaaatcgaagcaaaagcattacgtaaatta
cgtcacccaagccgcagcaaacaattaaaagacttcctagaataa
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