Listeria ivanovii subsp. ivanovii PAM 55: LIV_2252
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Entry
LIV_2252 CDS
T01623
Name
(GenBank) Putative ATP-dependent deoxyribonuclease (subunit A)
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liv03400
]
LIV_2252
Enzymes [BR:
liv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LIV_2252
DNA repair and recombination proteins [BR:
liv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LIV_2252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
CBW86747
UniProt:
G2ZBN9
LinkDB
All DBs
Position
complement(2381659..2385384)
Genome browser
AA seq
1241 aa
AA seq
DB search
MSLNIPDKPSSSTWTDDQWKAIQADGKNILVAAAAGSGKTAVLVTRIIEKLIDETAKWNV
DELLIVTFTNASAAEMKFRIGKALEEALAQNPDSAHLKKQVALLNYASISTLHSFCLEII
RKHYFEADIDPNFRLIEPIESSMIRDEVLEDLLEEAYGIKDNDPFFHLVDSFTGDRTDTE
LHLLISKLYDFSRANPEPDIWLEKIVDLYETNNITSITELPYFPIIKEDIELRINQAKND
LLTAIEYASDTGGPEPYLGTLEGDLAQINMLSQVNWDSWEDVKISIKSVDFKRIPTLKNK
SDYDEEYVEQTKKFRDAAKKEIKNILIDWFSRNEVNYLADLEKMKPDIKALSELVKKFAQ
NFFKEKQKRGVLDFNDLEHLALKILLKDGTPSEVAKSYQKQFKEVLIDEYQDTNMVQETI
LMLVTTVNETKGNLFMVGDVKQSIYRFRLAEPTLFMTKYQAYQQDGTGGGIRIDLSRNFR
SRKEVLDVTNFIFHQLMDNKVAEIDYDNAAELTLGSHFPESKNMATELLLIDMKTEEKET
EEKETEDDDLSPQELQKNQVEARAIALKVREMIDNKFPIYDKKMQQNRPIEYRDIVILAR
AMTSAPDIEEAMKLQDIPFYANNNSGYFETTEVATMIALLKVIDNPYQDIPLAAVLRSPI
IGLTEEELGEIRMAKKKGYFFDALLTFKDSVISEAADKISEFIKQLNNWRELSIRENLTS
LIWQIYQETNFYEFIGGLPGGKQRQANLRALYDRANQYEKTSFRGLFRFVRFVERLEVRG
DDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVSGLSKKFNMRDIYSKTLLDKDYGFAS
AYRDIEKMIVYPTIMQQAMKQKKMREMIAEEMRVLYVALTRAEEKLILTATVPDFEKTSK
QWLQVAKEKETILPAAIRAKAKCYLDWIGHALIRHISFKELLCEEVIQPLPTDMLLQIEI
KTKEMFWSSEVTESKQDNLLAKVRAHQPVPVQSAYKDEIERFMNYQYKDEAATEIRAKQS
VTELKRQFTLQDSWSDTTLLKEFQKVSLDRPKFLQQNKLSATEIGTAMHTLMQAVSLENK
PSINEVRQLLQKMREKDILTEAQVKAINIEQILGFFESELGEKVLLEKDHVKREVPFSYL
LPVAKLYKQANIDEHVLIQGVVDSMIDQEDSIILIDYKTDKITGRYADWDAAEKVMKDRY
QIQIKLYAEAIQAISGKRVSEAYLYFFDGQHMCRINTEEGF
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgagtctaaatatacctgataaacccagtagctcaacatggactgatgaccagtggaaa
gccattcaagcagatggaaaaaacattctagtagctgctgctgcgggttctgggaaaaca
gccgttcttgttactaggattattgaaaaattgattgatgaaacagctaaatggaatgta
gatgaattactaatagttacatttacaaatgcatcagcagcagagatgaaatttagaatc
ggcaaagctttagaggaggctcttgcgcaaaatccggattctgcgcatttgaaaaaacaa
gtggcattactaaattatgcttctatttcaacactgcattcattttgtttagaaattatt
cggaaacattattttgaagcagacattgatcctaacttccgtttaattgagccaattgaa
agtagtatgattagagatgaagtactagaagacttgttagaagaagcatatggtattaaa
gataatgatccgttctttcatttagtagattcatttacaggggatagaacagatactgaa
ctacacttgctcatatcaaagctatatgatttttcaagagctaatcctgagccagacatt
tggttagaaaaaatagtggatttatatgaaacaaataatattacatctatcaccgaatta
ccttattttccgattattaaagaagatattgagcttcgaattaaccaagctaaaaatgat
ttgttgactgctatagaatatgcaagtgacacaggtggaccggaaccataccttggtaca
ttagaaggagatttggctcaaatcaatatgctatcccaagtgaactgggatagttgggaa
gatgtgaaaataagtatcaaaagtgttgattttaagcggatacccacgctcaaaaataaa
agtgattatgatgaggagtatgtcgaacagacgaaaaagtttcgagacgcagcaaaaaaa
gaaatcaaaaatattttaatagactggttttccagaaatgaagttaattatttagcagat
ttagaaaaaatgaaaccagatattaaagctttaagtgaattggtgaaaaaatttgcacaa
aacttttttaaggaaaaacagaaacgaggagtcttagattttaatgatttagaacactta
gcgttaaaaatattactaaaagatggcaccccgtctgaagttgcaaagagttatcagaag
caatttaaagaagtgttaattgatgaatatcaagatacaaacatggtacaagagacaatc
ttaatgctagtaactacagtgaatgaaacaaaaggaaacttatttatggttggtgatgta
aagcagtctatttatcgtttccgtttagctgaacccactttatttatgacgaaatatcaa
gcatatcaacaagacggaacaggtggcggcatacggatagacttgtcacgtaatttcaga
agtagaaaagaagtcctagatgttacaaattttatttttcatcaattaatggacaacaaa
gtggcagaaatcgactatgataatgcggctgaattaacattaggttctcattttcctgag
tcaaaaaatatggcaacagaacttttattaattgacatgaaaacagaagaaaaggaaaca
gaagaaaaggaaacagaagatgatgatttatctccacaagaacttcaaaaaaatcaagta
gaagccagagctattgcgttgaaagttagggaaatgattgataataagtttccaatctat
gataaaaaaatgcaacagaatagaccaatagagtaccgagatattgtcattttagcacgg
gcaatgactagcgcacctgatattgaagaggcaatgaagcttcaagatatcccgttttat
gccaataataattctggttattttgaaacaactgaagtggctacaatgattgctcttttg
aaagtaattgataatccatatcaagatattccattagctgctgttttaaggtctccaatt
attggcttaacagaagaagaattaggagaaattcgtatggcgaagaaaaaaggctatttc
tttgatgcgttgctaacctttaaagacagtgttatttcggaagcagcagataaaattagt
gagtttataaaacaattaaacaattggcgtgagctgtccattcgggagaacttaacttca
ttaatttggcaaatctatcaagaaaccaacttttatgaatttatcggtggtttgccaggt
gggaaacagcgtcaagcaaacttgagagccttatacgacagagctaatcagtatgaaaaa
acttctttcaggggactatttcgatttgtccgattcgttgagcgtttagaagttcgtggg
gatgatcttggaacagctaaaacgctaggtgaaaaagaagatgttgttcgtatgatgact
atccacgcgagtaaaggactagaatttccggtggtaatagtatccgggctaagtaaaaaa
tttaatatgcgtgatatttatagtaaaacattattagacaaagactatggttttgcatct
gcttacagagatatagaaaaaatgattgtatacccaactattatgcaacaggcaatgaag
caaaagaaaatgcgcgaaatgatagctgaagaaatgcgtgtcctctatgtagcgctcact
cgggcagaagaaaaattaattttaactgctactgttcctgattttgaaaagacaagtaaa
caatggctacaagttgcaaaagaaaaagaaaccattttaccggcagcaataagagcgaag
gcaaagtgttatttggattggattggacatgcgctaattcgtcatattagttttaaagaa
ttactttgtgaagaggtcattcaaccacttccaactgatatgttgctccaaatagaaatt
aaaacaaaagaaatgttttggtcaagtgaagtaacagaaagtaaacaagacaatttgttg
gcaaaggtaagagctcatcaaccagtgcctgttcaaagcgcatataaggatgaaattgag
cgatttatgaactaccagtataaagatgaagcagcaactgaaattcgcgctaaacagtct
gtaacggaattaaaacgacaatttaccttgcaggatagttggagtgacacgacgctatta
aaagaatttcaaaaagtatcactggatagacccaaattcttgcaacaaaacaaattatct
gcaacagaaataggtacagccatgcatacactaatgcaggcggtttctctggaaaataaa
cctagtataaacgaagtgaggcaacttttacaaaagatgagagaaaaagacattttgaca
gaagcgcaagtcaaggctattaatatagagcaaattcttggtttctttgaatcagaacta
ggcgaaaaagtacttctggaaaaagatcatgtgaagcgtgaagtaccatttagttatttg
cttcctgtagctaaactttacaaacaggcgaatatagatgaacatgtactcattcaaggg
gttgtcgatagtatgattgatcaagaagattccatcattttaatcgattataaaacggat
aaaataactggaaggtatgctgactgggacgcagcagaaaaagtaatgaaagatcgctat
caaatacaaatcaagctttacgcggaagcaattcaggcaataagtggaaaacgagtatcc
gaagcatacttatacttttttgatggacagcatatgtgccgaataaacacagaggaaggt
ttttaa
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