Listeria ivanovii WSLC3009: AX25_07910
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Entry
AX25_07910 CDS
T03045
Name
(GenBank) recombination protein RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
liw
Listeria ivanovii WSLC3009
Pathway
liw03410
Base excision repair
liw03430
Mismatch repair
liw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AX25_07910
03430 Mismatch repair
AX25_07910
03440 Homologous recombination
AX25_07910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liw03400
]
AX25_07910
DNA repair and recombination proteins [BR:
liw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AX25_07910
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AX25_07910
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AX25_07910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AHI56021
LinkDB
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Position
complement(1593204..1595555)
Genome browser
AA seq
783 aa
AA seq
DB search
MIDSKYLWNIEEAEEEKATQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYQTYDP
FLFAEMDLAVARIKQAIELNEQILVYGDYDADGVTSIAVLMKTLQHLGANAEFYIPNRFT
EGYGPNIAAFDLAKNQGVDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV
AVIHPKHPKSAYPFDELAGVGVAYKLSHALLGEEPTELLDLVAVGTVADLVSLTDENRML
VQLGLRQLREGANIGLAILAKKASLKLEEATEETIGFGLAPRLNAVGRLGPADPAADLLL
TEDPEEALFLAEEIDDANKERKQMVVDTTKLAMEAIEAKNSLGKVLVVSGEGWNTGILGI
VASKLVSVYSRPAIVLGIDAATGIAKGSGRSIESFHLYQALDKHRELMTAFGGHPMAAGL
TLPAENLVELEAKLQEEASQLVEEDFRPALQIEERINLADASVAFIAQLEKLAPFGMDNP
KPIFLLEGMKLKGTKRIGADKTHLKTMLGTGGTDTTLDAIGFGVGDLVEKISPSADVDVV
GELSINEWNNIKKPQLRMMDVRIAHWQLFDVRSKTEWSRIRQEKADSRIYICFEERTAKT
LGEQNHFLVDEKADFKVDIQTEELVFADIPPNLKLIEEIVREVKPARIFVHFDAAEGNQI
PAIPDRKAFAELYSLIKKFQPFPIEKYTPRLMQKFGWNKEQIEFMSNVFFDLEFAKMESG
QIIVNQVVGKRNLDESLVYQQKVEEITTRKKLLYSNYSELHSWMKSMMETSIYPNAEELE
NGN
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
gtgattgattcaaaatatttatggaatatcgaggaagccgaagaagagaaagcaactcaa
ttagcagaacaactgaaaatctcgcttccacttgcaaagctactttggaaaagaaagatt
acaacgcaaggacaattcgataaatttttccacccagaaaaatatcaaacttatgaccca
tttctatttgcggaaatggatcttgcggttgcgaggattaaacaagcaatcgaactaaat
gaacaaatccttgtgtacggagactatgatgcagatggtgttacgagtattgctgtgtta
atgaagacattgcagcatttgggagctaatgcagaattttatatcccaaatcgctttaca
gaaggttacggacctaatattgccgcttttgatttggcgaagaaccaaggcgttgattta
ataattaccgttgataatggtattgctgcgctagaagttatgacacatgccaaagaaatt
ggtttagatgttatcgtaacggaccatcatgaaccacgggaagttatgccagaagcagtc
gctgttattcatccgaagcatccaaaatctgcttatccatttgatgaactcgctggggtt
ggagttgcttataaattatctcatgcactacttggcgaggaaccaacagaattattagat
ttggttgcagtcgggacggttgctgatttagtgtcactaactgacgaaaatcgtatgctg
gtccaattaggtttgcgtcaactacgcgaaggggcaaatattggtttagctattttagca
aaaaaagctagtttgaagttggaagaagctacggaagaaacgattggatttggtcttgct
cctagacttaatgcagttggccgtcttggccctgcggatccagcagcagatctgctttta
acagaagatccagaagaagcactttttttagcagaagagattgatgacgctaataaagaa
cgcaaacaaatggttgttgatacgactaaacttgcgatggaagcaattgaagcaaagaac
agtctggggaaagtgttagttgttagtggagaaggatggaatacagggattctgggcatt
gtggcctcaaaactagttagtgtgtattctagaccggccattgtactaggtatagacgca
gcaacaggaatagctaaaggttcaggtcgtagcatagagtctttccatttgtatcaagca
cttgataaacatcgagaattaatgactgcatttggtggtcatcccatggctgctggtctt
actttgccagcagaaaatttggtggaattagaagctaagttacaagaggaagcgagccaa
cttgtagaagaagattttcgtccagccttgcaaatagaggaacgtattaatctagcagat
gcctcggtagcttttatcgctcaactagaaaaactagcaccgtttggaatggacaatcca
aagccaattttccttttagaaggaatgaagttaaaagggacgaaaagaattggcgccgac
aaaacacatctaaaaacaatgcttgggacaggtggaacggatacaacacttgatgccatt
ggctttggcgtaggcgatctagtcgagaaaatttctccttcagcagatgtagatgtcgtt
ggtgaattatctatcaatgaatggaacaatattaaaaagccacaacttagaatgatggat
gttcgtattgcacactggcaacttttcgatgtgcgaagtaaaacggagtggtcgcgaatt
cgtcaagaaaaagcggattcacgcatatatatttgttttgaagagcgaacagctaaaaca
ctcggagaacaaaaccattttttagtagatgagaaggcagatttcaaagtagatatccaa
acagaggagctcgtatttgcggatattccaccgaatctaaagctgattgaagaaattgtc
cgcgaagtaaaaccagcgcgtatctttgttcattttgatgcagcagaaggaaatcaaatt
ccagcaataccagatcgtaaggcatttgctgagctatatagcttaataaaaaaattccaa
ccatttccaattgaaaaatacacaccacgcttaatgcaaaagtttggttggaataaagaa
caaattgagtttatgtcaaacgtgttttttgatttagaatttgctaaaatggaaagtggt
cagattattgttaatcaagtagttggaaaacgtaatctggatgagtcactagtttatcaa
cagaaggtagaagaaattactactcgaaaaaaattgttatactccaactacagcgagctt
catagttggatgaagtcaatgatggaaacatcaatttacccgaatgcggaggaacttgaa
aatggaaattaa
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