Limnospira indica: H2674_02890
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Entry
H2674_02890 CDS
T10214
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lix Limnospira indica
Pathway
lix03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lix00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H2674_02890 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lix03021
]
H2674_02890 (rpoB)
03400 DNA repair and recombination proteins [BR:
lix03400
]
H2674_02890 (rpoB)
Enzymes [BR:
lix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H2674_02890 (rpoB)
Transcription machinery [BR:
lix03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H2674_02890 (rpoB)
DNA repair and recombination proteins [BR:
lix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H2674_02890 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QNH58323
LinkDB
All DBs
Position
complement(623162..626470)
Genome browser
AA seq
1102 aa
AA seq
DB search
MTNTTQSESAFGLPDLIEIQRSSFRWFLETGLIEELESFSPISDYTGKLELHFLARDYKL
KQPKYDVDDAKRRDSTYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTERGTFIINGAE
RVIVNQIVRSPGVYYKSEIDKNQRRTYSASLIPNRGAWLKFETDKNDLVWVRIDKTRKLS
AQILLKALGLTNNEIFDALRHPDYFQKTIEKEGEFSEEDALMELYRKLRPGEPPTITGGE
QLLQNRFFDPKRYDLGRVGRHKLNRKLRLSVPDSTRVLTPTDILSAIDYLINLEYDIGET
DDIDHLGNRRVRSVGELLQNQIRVGLNRLERIIRERMTVGDAETLTPASLVNPKPLVAAI
KEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIE
TPEGPNAGLIGSLATHARVNPYGFIETPYYPVENGRVRRDLSPVYMTADEEDDLRVAPGD
ISYDSEGYILGDLVPVRYRQDFTKTSPDQVDYVAVSPVQIVSVATSLIPFLEHDDANRAL
MGSNMQRQAVPLLRPERPFVGTGLEAQAARDSGMVIVSRTDGEVSYVDGAKIRVIDPEGW
EIEYELQKYQRSNQDTCLNQRPLVYEGDQVVAGQVLADGSSTEGAELALGHNVLVAYMPW
EGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDSLRQLDA
SGIIRIGAWVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGR
VVDVRVFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIVSRILPIEDMPY
LPDGRPMDIVLNPLGVPSRMNVGQIFECLMGWAGENLKRRFKVIPFDEMFGQEMSRETVH
SKLKEAREKLKKDWLFSEEYPGKTIVYDGRTGEAFDQPVTVGIAYILKLVHLVDDKIHAR
STGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMAGRNEALN
AIVKGKAIPRPGTPESFKVLMRELQSLCLDIAAHKVETNKKDGASKDLEVDLMADEPHRV
RTPSKPTYDLSVIDDDDQGNRL
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacacaacccaatccgaatcggcatttggacttcctgatttaattgaaattcag
cgatcgagttttcgttggtttttagaaaccgggctaattgaagaattagaaagtttctcg
cccatcagtgattatacagggaaactagaactgcatttcttagccagagattacaagctg
aaacagcccaaatatgacgtagacgatgccaaacggcgggatagtacatactccgtgcag
atgtacgtccctacccgactaattaacaaagaaaccggggagattaaggagcaggaagtt
tttatcggagacctgcccttaatgaccgaacgtggcacgtttattattaacggagccgag
cgagttattgttaaccaaattgtgcggagtccgggggtatactacaaatcggaaatcgat
aaaaatcaacgacgtacctatagcgcctccctcatcccgaaccgaggcgcttggttgaaa
tttgaaaccgataaaaatgatctagtttgggtaagaattgacaaaactcgcaaactgtcg
gctcagatacttctgaaagccctaggattgacgaataacgaaatatttgacgcattgcgg
cacccagactacttccaaaaaaccatcgaaaaagaaggggaatttagcgaagaagatgcc
ctgatggagttgtatcgaaaactgcgaccaggggaacctcccaccatcaccgggggagaa
caacttttgcagaatcgcttctttgacccgaaacgctatgatttgggtcgggtaggacgg
cataaactgaaccggaaactaaggctaagtgtgccagatagcaccagagtcctaactccc
actgatattctatcggcgatcgactacctgattaacctagaatacgacatcggcgaaacc
gatgacattgaccacctgggtaatcgtcgggtgcgttcagtaggggaactattgcaaaac
caaatccgagtaggtttaaaccgtttagaaagaattattcgggaacggatgaccgttggc
gatgccgaaaccctaacccccgcctccctagtgaacccgaaacctttggtagcagccatc
aaagaatttttcgggtctagccaactgtcccaatttatggatcaaactaaccccctagcg
gaattaacccataaacggcgtttatctgccctaggtcccggtggcttaacacgagaacgg
gctggctttgctgtgcgtgatattcacccaagccactatggtcgtatctgtcccatcgaa
accccagaaggaccgaacgcgggtctaattggctccctggctacccacgcccgggttaac
ccctacggcttcatcgaaaccccttactatcccgtagaaaatggacgagtgcgccgagat
ttgtctccggtgtatatgacggctgacgaggaagacgatttacgggtagcaccaggagac
attagctatgactccgagggatatatcctcggcgacctagttccggtgcgttatcgtcag
gacttcaccaaaaccagccccgaccaagtggactatgtagcggtttccccggtgcaaatt
gtctcggtagctacctccctaattcccttcctagaacacgatgacgctaaccgtgcgctg
atgggttccaatatgcagcgccaagcagttccgctgctgcgtcctgaacgtccgtttgta
ggaacgggactagaagcccaggcggcgcgggactcaggtatggtgattgtatctcgtact
gatggagaagtcagttatgtggatggcgcgaaaattcgggtgattgacccggaaggttgg
gaaatcgaatatgaactgcaaaaataccaacggtctaaccaagatacctgcttaaaccag
cgccccttagtctatgaaggcgaccaagtagtggcaggtcaggtgttagctgatggttcc
tcgacggaaggggcagaattggctctgggtcataacgttttagtggcctatatgccctgg
gaaggctacaactatgaagacgcaatcctaattagtgaacgtctggtttatgacgatgtt
tatacgtcaatccatatcgaaaaatttgagattgaggcgcgacaaaccaaactaggaccc
gaagaaattacccgcgaaatacccaacgtcggggaagactccctgcgacaactggacgct
tccgggattattcgcattggcgcttgggtagagtcgggagatattctggtaggaaaagtt
accccgaaaggagagtcggaccaacccccagaagaaaaactgctgcgggctatctttgga
gaaaaagccagggatgtgcgggataactcgctgcgggttcctaatggtgaaaaagggcgg
gtggtcgatgtgcgggtgtttacccgagaacaaggcgatgaactgcccccaggagctaat
atggtggtgcgggtctatgtggcacaaaaacgtaaaattcaggtgggagacaaaatggcg
ggccgccacggtaataaggggattgtctcgcgtattcttcccattgaagatatgccctat
ctccctgatggtcggccaatggatatcgtcctgaatcccctgggtgtgcctagtcgtatg
aatgtaggtcaaatctttgagtgtttgatgggatgggcgggagaaaacctgaaacggcgg
tttaaggtgatcccgtttgatgaaatgtttggtcaagaaatgtcccgtgagacagtccac
agtaaacttaaagaagcccgcgaaaaactcaaaaaggattggttatttagtgaggaatac
ccaggcaaaactattgtttatgacggccgcacgggagaagcctttgaccaaccggtaacg
gtgggtatcgcttatatcctcaagttggttcacttggtggatgataagattcacgcccgg
tctactggtccttattctttggtgactcaacagccgttgggtggaaaggcacaacaaggc
ggtcagcggttcggagaaatggaggtgtgggcattggaagcgtttggggcagcttatact
ttgcaagagttgctaacggttaagtctgatgatatggcaggccgtaatgaagctctaaat
gcgatcgttaaaggcaaagctatccctcgaccaggtacgccagaatcgtttaaagtgctg
atgcgggagttgcaatctttgtgtttggatattgcagctcataaggtggaaactaacaaa
aaggatggtgctagtaaagatttggaggtagacctgatggctgatgagcctcaccgggtc
agaacaccttctaagcctacatacgatttgagcgtcattgatgacgacgatcagggtaac
cggttgtag
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