Limnospira indica: H2674_13575
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Entry
H2674_13575 CDS
T10214
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lix Limnospira indica
Pathway
lix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2674_13575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lix03019
]
H2674_13575
03009 Ribosome biogenesis [BR:
lix03009
]
H2674_13575
Enzymes [BR:
lix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H2674_13575
Messenger RNA biogenesis [BR:
lix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H2674_13575
Ribosome biogenesis [BR:
lix03009
]
Prokaryotic type
rRNA helicases
H2674_13575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
Cas3-like_C_2
UvrD-helicase
AAA_19
Flavi_DEAD
MatB
Motif
Other DBs
NCBI-ProteinID:
QNH60050
LinkDB
All DBs
Position
complement(3072956..3074353)
Genome browser
AA seq
465 aa
AA seq
DB search
MSQSFESLGISEQRARHLETLGFTEPTPVQVQAIPEMLSGRDVVGMAQTGTGKTAAFSLP
ILEQIDVHAAGIQALVLTPTRELAMQVKEAIRNFSDDNALYVLTVYGGQSIDRQIQRLRR
GVQVVVGTPGRILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQT
AFFSATMDPSISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARALEPILEL
EDPESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVAT
DIAARGLDVDHLTHVINYDLPDQVESYVHRIGRTGRAGREGKAITLIQSIDRRKLRNIER
HLRQTLSIQSVPKRAEIEARYIDRLKDRVRDALAGERMASFLPIVSQLSEEYDPHAIAAA
ALQLAYDQTRPASIGRDDYDDEDDAVSNKPKLVKRRRPASVSNNS
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaatcctttgaaagcttaggtatttccgaacaacgcgctcgccatttagaaaca
ctgggtttcacagaacccaccccggttcaagtccaagctatacccgaaatgctatccggt
cgggatgttgtgggtatggcacagacaggaactggtaagactgctgccttttcgctgccc
attctcgaacagattgacgttcatgccgctggtattcaagccctggttttgactcccacg
cgggaactggcgatgcaggtcaaggaagctatccgcaattttagtgatgataatgccctg
tatgtgctgacagtttatggcggtcagtccattgaccgacaaattcagcgactgcgacgg
ggagttcaggttgtagtgggaaccccagggcgtatcctagacctactcaaccgaggtgaa
ctgaaactagatttactgcgttggttggtgttggatgaagcagacgaaatgctgagtatg
ggctttatccaagatgtagaaaaaatcttagagtccgccgactctgaacatcgtcagacg
gctttcttctcagcaacgatggacccttccatctcgaagttggtgcggcgacacctcaag
tcccctgtgactgtgaaggtggaaactcccaaggctacccccaaacggatcgaacagtct
gtttatatggttcctcgtggatggtctaaagcccgcgccctggaaccgattttagaactc
gaagatcctgaatcggcgattatttttgtgcgaaccaaacaatctgcggctgatttgact
aatcaattgcaggcggcaggtcatagtgttgatgagtatcatggtaatctgaatcagtct
caacgggagcgactgttgatgcgtctgcgccgccgtcaggtgcgttggattgtggctact
gatatcgcagcccggggtctggatgtggatcaccttacccatgtgattaactatgatctt
cctgatcaagtcgagagttatgttcaccgcattgggcgtacaggtcgcgccggtcgggaa
ggaaaggcaattactctaattcagtctatcgatcgccgtaagttgcgaaatattgaacgt
cacctgcgccaaactttaagcattcagtcagtccccaaacgggcggaaattgaggctcgt
tatattgaccgactcaaagaccgggtgcgggatgctttggctggggaacgtatggcttca
ttcttgcctattgtctctcaattaagcgaggaatatgatccccatgcgatcgcagccgca
gctttgcaacttgcttatgatcaaactcgtccggctagtatcggaagggatgattatgac
gatgaagacgatgctgtttccaacaaacctaagctagttaaacgccgccgcccagcttct
gtttctaacaacagttag
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