Limnospira indica: H2674_22425
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Entry
H2674_22425 CDS
T10214
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lix Limnospira indica
Pathway
lix03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H2674_22425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lix03400
]
H2674_22425 (mfd)
Enzymes [BR:
lix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H2674_22425 (mfd)
DNA repair and recombination proteins [BR:
lix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H2674_22425 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QNH56891
LinkDB
All DBs
Position
complement(5032288..5035791)
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AA seq
1167 aa
AA seq
DB search
MTFSAVVRTLGRSPLTAELLTKLNQQQALHLNGLPRVPKGLTASALAQEAGLNLLVITAT
LEEAGRWSAQLEVMGWQTVHFYPTSEASPYEPSYSEEMVWGQMQVLADLVARNTGKADPV
AVVATERSLQPHLPPVSDFQSYCLTLKLGMTWEGKTIDEKLAQLGYQRVAVVETEGQWSR
RGDIVDVFPVASELPVRLEWFGDELERIRELDPVTQRSLDRVEQLILTPTNFAPIIEANL
SLSTETLETLKSAQISETKTGLSHLLGLAYHKPASLIDYLPELTLAVIDEPDQCAGHGDR
WFEHIDEQWQNEQGKLVTAEGISVEIPAIHQCFRESLATVENRFDRLYLSELADYKSPLI
QASTASINLASRPVPVTPHQFGKIAEVIRQQRDRQFTVFLISAQPSRSVALLSEHDCPSK
FIPNPRDYPAIDSLIRNTPIALKYTGLAELEGFILPTFRLVIITDREFYGQHALATSGYI
RKRRRAASKQVDPNRLQPGDYVVHRQHGIGKFVKLESLTINQEIRDYLVLQYADGTLRVA
ADQVGTLSRLRRSESKVPQLNKLTGKAWEKSREKVGKSIKKLAVDLLKLYAERSQKTGFS
YPQDTPWQQEMEDSFPYQPTPDQLKCSQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAI
FKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNRFRSASEKKLIQQKLTTG
EIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPIPRT
LYMALSGIREMSLITTPPPSRRPIQTHLGPLNQETIRAAICQELDRGGQVFYVVPRIEGI
EEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNT
ILVEDAHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVKGDGQAALTEDAVKRLRAIKEFTQ
LGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQVDDTQ
VDLILTAFIPSDYITDLDQKMSAYRAVASCQDSEELSRIEEDWSDRYGKIPAPAQQLLRV
MELKQIAKKLGFARIRPDDSKQNIVLETPMEEPAWNLLKQNLPEHLQPRFIYGRKQVKIR
GLGALPPSKQLDCLIQWLQTMQEGIQS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaccttttctgctgtagttcggaccttggggcgatcgcctctgacggctgaacttctg
actaaactgaaccaacagcaagcccttcaccttaacggtcttccccgtgttcccaaagga
ctgacggcttcagctttagcccaggaagcggggttaaacctattggtgataacagctact
ttggaagaggctggtaggtggtcagcccagctagaggtgatggggtggcagacggtacac
ttttacccgacctcggaagcatccccctatgaacccagttatagcgaagagatggtctgg
ggacagatgcaggtattagcggacttagtggcaagaaacacagggaaagcagacccggtg
gcggtggtagctacagagaggtctttacaaccccatctccctccggtgagcgacttccag
agttattgtctaaccctgaagttggggatgacctgggaaggaaaaaccatagacgaaaaa
ctcgcccagttgggatatcaacgggtggcagtggtggaaactgaggggcagtggagtcgc
cggggagatattgtagatgtgttccctgtggcttcagaacttccggtgcgtctggaatgg
tttggggatgagttagaaagaattagggaactggacccggtgacacagcgatcgcttgat
cgggttgagcaactaattctcacgccgacgaattttgctccgattatcgaagcgaattta
tccctatctacggagaccctagaaactctcaaatcggctcagatatcggagacgaaaacc
ggactatctcatctgttaggattagcatatcacaagccagcttctttaattgattatcta
ccggaattaactttagcggtaattgatgaacctgaccaatgtgcaggtcatggcgatcgc
tggtttgaacatatcgatgaacagtggcaaaatgaacaaggtaagctggtaacagcagaa
gggatatctgtggaaattccggcaattcatcaatgcttccgggagtccctagcgacggtt
gaaaatcgttttgataggctgtatctcagtgaactggctgattataaatcccctcttatt
caggcttccacggcatcgataaacttagccagtcgtcccgtcccggtgactccccaccaa
ttcggaaaaattgccgaggtgattcgccaacaacgcgatcgccaatttacagtctttcta
atttccgcccaacctagccgctcagtggctttgttatcggaacatgattgcccatctaaa
tttatacccaacccccgcgactatccagccatagactcattaatccgtaatacccccatt
gctttaaaatatacgggactagccgaattagaagggtttattctccccaccttccgttta
gttattatcacggacagagagttttatggtcaacacgctttagctacttctggttatatc
cgcaaacgccgccgcgccgcctccaaacaggtagatccgaatcgactacaaccgggagat
tatgtggttcaccgccaacatggaatcggtaaatttgtgaagttggaaagcctgactatt
aatcaagaaatccgcgattatttagtgttacaatatgcagatggaaccctaagagtggcg
gcggatcaggtgggaactttatcccgtctaaggcggtcagagtcgaaggttccccaactc
aataagttgacgggtaaagcctgggaaaaaagtcgggaaaaagtgggtaagtccattaaa
aaattggcggttgatttgctgaaactttacgccgaacgttcccaaaaaactggatttagc
tatccccaggatacaccttggcagcaggaaatggaagattcttttccttatcaaccgact
cccgaccaactgaaatgtagccaagatgtgaaacgggatatggaaagcgatcgccctatg
gatcgtctggtgtgtggagatgtcggttttgggaaaacggaagtagcaattagggcgatt
tttaaagcagttacggcggggaaacaagtggcatttctcgcccccacaacgattctcacc
caacaacattatcacacactaaaagaacgttttgcgccttatcccattgaaattggattg
cttaatcgcttccgtagcgctagtgaaaaaaagttgattcaacaaaagttaacgaccgga
gaaatagatattattgtgggtacgcattcggtgttatctaaacatattaaatttcgggat
ttgggactgttggtagtggatgaagaacagcggtttggggtgaatcaaaaagagaaaatt
aaagccctaaaaactcatgtggatgttttgactctgacggcgactcccattcccaggacg
ctgtatatggcgttatcaggtattcgagaaatgagtttaattacaaccccaccaccctct
cgtcgcccaattcaaacccatttaggaccattaaaccaggaaactattagggcggcgatt
tgtcaggaactagatcggggaggacaggtgttttatgtggttccccgcattgagggtatt
gaggagaagtcggcggcgattagagaaatggtccctagtgctagattggcgatcgctcat
ggtcaaatggaagctggagagttagagtcgatcatgctcacttttagcgccggagaggct
gatattctcgtctgtacgaccattattgagtcgggcttagatatcccccgtgttaatact
attctggtcgaggatgcccataaattcgggctaggacaattgtatcagttgcgcggtcgt
gtggggagggcgggagttcaagcccacgcttggctattttatccggttaaaggtgacgga
caggcggctttaacagaagatgcagttaagcgactgagggcgattaaggagtttacccag
ttggggtctggttatcaattggcgatgcgagatttggaaattcgcggcgctggggatatt
ttgggcgctcaacagtcgggtcaaatgaatgcgatcggttttgatttatataccgaaatg
ctacaggaagctatccaagaggtacgcggacaggaaattccccaggtcgatgatactcag
gtggatctgattttgacggcattcatcccatcagattatatcacagatttagatcaaaaa
atgagtgcttatcgggcggtggcatcttgtcaggattcggaagagttaagtagaattgag
gaagattggagcgatcgctatggtaaaattcccgcaccagcccaacagttactccgggta
atggagttaaaacaaatcgctaaaaagttggggtttgctcgcattagaccggatgattct
aagcagaatattgttttagaaacacctatggaagaacccgcctggaatttattaaagcag
aatttacctgaacatttacagcctcgctttatctacggtcgcaaacaggtaaagattcgt
ggcttgggggccttacctcctagtaagcagctcgattgtctgattcaatggttgcaaact
atgcaggagggaatccaatcataa
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