Limnospira indica: H2674_22485
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Entry
H2674_22485 CDS
T10214
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lix Limnospira indica
Brite
KEGG Orthology (KO) [BR:
lix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lix03009
]
H2674_22485 (rlmD)
Enzymes [BR:
lix01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H2674_22485 (rlmD)
Ribosome biogenesis [BR:
lix03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H2674_22485 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
UPF0020
Methyltransf_12
TRM5-TYW2_MTfase
Motif
Other DBs
NCBI-ProteinID:
QNH60346
LinkDB
All DBs
Position
complement(5045051..5046436)
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AA seq
461 aa
AA seq
DB search
MATWQQGQQIEVSITDLAEGGNGVGRYQDRVVFVPDTVPGDRALVRLTRVKSKYAEAKIL
KLITTSSSRIRPHCIVADKCGGCQWQHIDYDFQLEAKRGLVVNALTKMGGFIEPPVAPVL
PSPQSLAYRNKVTYPLRLSSTGQVQAGYYQKGSHRLINLNQCPVQDQRLNPLLANIKQDI
QNRGWLVYDEQQHTGTIRHLSFRIGRRTGEILLTLVVKDNKLPQLKEQADIWLQQYPQLV
GVCLNINSDRTNAILGKNTHCLIGKPYIHEIFADLKLRLTSDNFFQVNTEAAESLLSAIS
SELNLQGHEILVDAYCGIGTFTLPLAKQLGQNFPPGEIRAIGLESQAGAVEQAISNADLN
DINHVEFRVGNVQKLLPEIPFQPDIVVLDPPRQGCDRTVIQTLLNLQPQRIVYISCRPVT
LARDLQLLCENGIYQLTKVQPADFFPQTSHVECAAFLTLSH
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttggcagcaaggtcaacagatagaagtctcaattacagatttagcagaaggc
ggaaacggagtcggacgatatcaagaccgagttgtgtttgtcccagatacggtcccaggc
gatcgcgctttggtcagactcacacgggttaagtctaaatacgcagaagccaaaatactt
aaactgatcacaacgtcatcatcccgtatccgtccccattgcattgttgctgacaaatgt
gggggctgtcagtggcagcatatagattatgatttccaactagaagccaaaaggggttta
gtagttaatgcgttaaccaaaatggggggatttatagaaccaccagtagccccagttttg
ccctcccctcaatctttagcctatcgcaataaagttacctatcccctacgattatcttct
acaggtcaggtacaagctggatattatcaaaaggggagccatcggttaattaatttgaat
cagtgtccggtgcaagatcagcgcctcaatcctttattggctaacattaaacaggatatc
caaaatcgcgggtggctggtttatgatgaacaacaacacactggcactatccgccatctt
tcttttcgcatagggcggcgcacaggggaaattttgctcactcttgtagtcaaagataat
aagttaccacaacttaaagaacaggctgatatctggctacagcaatatccacaattggtg
ggagtttgtcttaatatcaatagcgatcgcactaatgctatccttggcaaaaatacccat
tgtctcatcggcaaaccttatatacatgagatatttgctgatttaaagttgcgcttgact
tcggacaatttctttcaagtcaatacggaagcggcggaatctctgttatcagctatttcc
tcggagttgaatttgcagggtcacgaaattctagtagatgcttactgtggtatcggcacg
tttactctacccctagcaaaacaattaggacagaatttccccccaggagaaattagggcg
atcggtttggagtcccaagctggggcggtagaacaagctatttctaatgctgatttaaat
gatattaatcatgtagagtttcgcgtcggtaacgtccaaaaactcttgccagaaatacca
tttcagccagatatagttgtgctagatccaccccgacaaggatgcgatcgcactgttatt
caaactctcttaaatctacagcctcaacgcattgtttatatcagttgtcgtcccgttact
ttggcacgagatttacaactactctgcgaaaacggcatttatcaactcaccaaagtacaa
cctgccgattttttcccacaaacctcccatgttgaatgtgcagcctttttgactcttagt
cactaa
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