Limnohabitans sp. YIMB22184: ACHEXL_04020
Help
Entry
ACHEXL_04020 CDS
T11648
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
liy Limnohabitans sp. YIMB22184
Pathway
liy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
liy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACHEXL_04020 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
liy03021
]
ACHEXL_04020 (rho)
03019 Messenger RNA biogenesis [BR:
liy03019
]
ACHEXL_04020 (rho)
Transcription machinery [BR:
liy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACHEXL_04020 (rho)
Messenger RNA biogenesis [BR:
liy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACHEXL_04020 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
XOZ92786
LinkDB
All DBs
Position
complement(845853..847115)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSELLKQADALEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDSSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRIPKDGERYFALTKLDKVN
DDLPENNKHKVMFENLTPLFPKEQMRLERDIKGDENITSRVIDIIAPLGRGQRALIVAQP
KSGKTVMMQQIAHAITANYPDVHLMVLLVDERPEEVTEMQRSVRGEVISSTFDEPASRHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLERRLYEKRVFPAINL
NRSGTRREELLLQPEVLQKTRILRQFMYNMDEIEAMEMVLKSMKATKNNSEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttgaatgaactcaaggcacttcacgtgtccgaactcctgaagcaagccgacgcg
ctcgaaatcgagaacacgggtcgcatgcgcaaacaggagctgatgtttgccatcatcaaa
aagcgcgccaaagcgggcgaacaggtttttgccgacggcgtgttggagatcctgcccgac
ggtttcggctttttgcgcagcccggattcgagctacaccgccagcaccgacgacatctac
atcagccccagccaggtgcgccgctttaacctgcacaccggtgacatgatcgaaggcgaa
gtgcgtatacccaaagacggcgagcgctactttgccctgaccaaactcgacaaggtcaac
gacgacctgcccgagaacaacaaacacaaggtcatgttcgagaacttgacacctttgttc
cccaaggagcagatgcgtctggagcgtgacatcaagggcgatgaaaacatcaccagtcgc
gtcatcgacatcatcgccccgctcggccgcggccagcgcgccctgatcgtggcgcagccc
aagtcgggcaagacggtgatgatgcagcagatcgcccacgccatcaccgccaactacccc
gatgtgcacctgatggtgttgctggtcgacgagcgtcctgaagaagtgaccgaaatgcag
cgcagcgtgcgcggtgaggtgatctcctccacgtttgacgaacccgcttcgcgccacgtg
cacgtggccgagatggtgatcgagcgcgccaagcgtctggtcgagctgaaaaaagacgtg
gtgatcctgctggactcgatcacccgcctggcccgcgcctacaacaacgtggtgccttcc
tcgggcaaagtgctgtctggcggcgtggacgccaacgccctgcagcgccccaagcgcttc
tttggtgcggcccgcaatgtggaagaaggcggcagcctgaccatcatcgccacagccctg
gtcgacaccggcagccgcatggacgaagtgatctttgaagaattcaagggcaccggcaac
tgcgagattcacctggagcgccgtttgtacgaaaagcgcgtgttcccggcgatcaacctc
aaccgcagcggtacccgccgcgaagagttgctgctccagcccgaagtgctgcaaaaaacc
cgcatcttgcgtcagttcatgtacaacatggacgaaatcgaggcgatggagatggttttg
aagagcatgaaagcgaccaagaacaactccgagttcttcgacatgatgcgacgcggcggc
tga
DBGET
integrated database retrieval system
