Lichenihabitans sp. PAMC28606: LGH83_02090
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Entry
LGH83_02090 CDS
T07621
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03030
DNA replication
liz03430
Mismatch repair
liz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGH83_02090 (dnaE)
03430 Mismatch repair
LGH83_02090 (dnaE)
03440 Homologous recombination
LGH83_02090 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
liz03032
]
LGH83_02090 (dnaE)
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_02090 (dnaE)
Enzymes [BR:
liz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LGH83_02090 (dnaE)
DNA replication proteins [BR:
liz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LGH83_02090 (dnaE)
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LGH83_02090 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
Motif
Other DBs
NCBI-ProteinID:
UDL95072
LinkDB
All DBs
Position
447837..451298
Genome browser
AA seq
1153 aa
AA seq
DB search
MVADTSEPGFVHLHVHSSFSLREGALTIGKLAKLAAQDRMPALAITDSNNLFGALEFSEK
LSKEGIQPIVGLQIVVDFGDGAAVAGRFDVAKAGRGAIVLLGANEVGYANLMRIASRAYL
DPTPGEPPHVSFQRLSESHAGLIALTGGPSGPIDRLFAVDRADNAAQRLDRLVNLFGDDR
LYVELQRHSLDEERRVEPQLIDLAYRRDLRLVATNEPFFATQADHEAHDALICISEGAVL
GTPNRRQLSAEHRFKTRAEMLALFGDLPEATAHTVEIAQRCSYRPRTRKPILPNFTALNG
EPLDEVAALRQQAEQGLNARLASHGTAPGMSEDVYRQRLAFELDVIINMKFPGYFLIVAD
FIKWAKAHDIPVGPGRGSGAGSLVAYALTVTDLDPLRFGLLFERFLNPERISMPDFDIDF
CQNRRDEVIAYVRQRYGVDRVAQIITFGSFLARGVLRNVGRVLEMPLGQVDKLAKLVPQN
PANPVTLAQAVESEPRLQEAAETEPRVKRLLSISKTLEGLYSNASTHAAGIVIGDRPLDE
LVPLYRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTVLQTAVTLIAQRGIKVDLSAI
PIDDVKTYAMLGRGETVGVFQLESVGMRKALVDMRADRFEDLIALVALYRPGPMANIPVY
CARKLGEEVAEYPHPKLEAVLKETHGVIIYQEQVMQAAQMLSGYSLGEADMLRRAMGKKI
KAEMDAQRDRFVSGAVERGVKTETANTIFDLLAKFADYGFNKSHAAAYALIAYQTAYLKA
NYPVEFLAASMTLDKANTDKLSEFRNEARRLGIKVEPPSVNRSGVDFDVTRDDPAAIVYA
LSAIKGAGEGQIAAIVAARGSKRFSSLADFALRLTSRDVNKKVLESLAAAGAFDEFETDR
ARVFAGVEQVLGMATRAGDERRAGQSALFGASDVESAFRLPLADAWPAAERLRREFDAVG
FFLSGHPLDDYEAILKRLRIQRWAEFSRAVKGGATSARLAATVLDRMERRTKSGNKIGIV
NLSDASGQYEAIMFQETLNEHRDLFEKGSAVLITVQASAEGDEVRCRILTAEGLDQAAHR
AQKGLRIHVRDVAPLATIASRLDKKGDGEVSFVVMMDDGLREVEVKLPGKFSLSPLMAGA
LKAVPGVVAVENV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
ttggtagcggatacgagcgagcctggtttcgtgcaccttcatgtgcattcgtcgttttcc
ttgcgcgaaggcgcgctgaccattggcaagctcgcgaagctcgcggcgcaggatcgtatg
ccggcgctggcgatcacggacagcaataacctgttcggcgcgctcgagttttctgagaaa
ttatccaaggaaggcattcagccgatcgtcggccttcagatcgtggtcgatttcggcgat
ggagcggccgtcgcagggcgcttcgatgtggccaaggcgggtcgaggcgccatcgtcttg
ctcggtgctaatgaggtcggctacgctaatctcatgcggatcgcatcgcgggcctatctc
gatcccacgcccggcgagccgccgcatgtgagtttccagcgcctgtcggaaagccatgct
ggcttgatcgcgctgacaggcgggccctccggtcccatcgatcggctgttcgccgtcgat
cgagccgacaatgcggcacagaggctcgatcgtctcgttaatctcttcggcgatgatcgt
ctttacgtggaactccagcgtcattctctcgacgaggagcgacgcgtcgagccgcaactc
atcgatctggcttatcgtcgggacctgcgcctcgtcgccaccaacgagccattcttcgcc
acgcaggccgatcatgaggcccatgacgcgctgatctgcatctccgaaggcgccgtcctc
ggcacaccaaatcgacgccaattgtcggcggagcatcggttcaagacgcgtgctgaaatg
ctggcgctcttcggcgaccttccggaggccaccgctcatacggtggagatcgcgcagcgc
tgctcctaccggccgcgaacccggaagccgatcctcccgaacttcacagcgctgaatggc
gagccgctcgacgaagtggcggccctgcgccagcaggccgagcagggtctcaatgcgcgg
ctcgccagccatggcaccgcgcccggcatgagcgaggacgtctaccgccagcggctcgcg
tttgaactcgacgtcatcatcaatatgaagtttccgggctactttctgatcgtcgcggat
ttcatcaaatgggcgaaggcgcatgacattccggtcggcccggggcgcgggtcgggcgca
gggtccctcgtggcttatgcgctgaccgtgaccgacctcgaccccctgcggttcgggctc
ttgttcgagcgctttctcaacccagaacgcatctcgatgccggatttcgacatcgacttt
tgccagaaccggcgggacgaggtcattgcctatgtgcggcaacgctacggggtggatcgc
gtggcgcagatcattacgttcgggtcgtttttggcgcgcggcgtgctccgcaacgtcggg
cgggtgctcgaaatgccgctggggcaggtcgacaagctcgccaagctggtgccgcagaat
ccggctaacccggtgaccttggctcaggctgtcgagagcgagccgcgtctgcaggaagcc
gccgagaccgagcctcgggtcaagcgtcttttgtcaatctcgaagacgctggaggggctc
tattccaatgcctcgacccatgcggccggtatcgtgatcggcgaccgccccctcgacgag
ctcgtgccgctctatcgcgacccgaaatccgatatgccggcgacgcagttcaacatgaaa
tgggtcgagccggccggtttggtgaaattcgactttctgggtttgaaaaccctgacggtt
ctgcagacggccgtgacactcatcgcccaacgcggcatcaaggtcgatttgtcggcgatc
ccgatcgacgatgtcaaaacctatgccatgctcggacgcggcgaaacggtcggcgtgttc
cagctggaaagcgtcggaatgcgaaaagccctggtcgacatgcgcgccgatcggttcgag
gatctgatcgcgctggtggccctctatcggccgggtccgatggccaatatcccggtctat
tgcgcccgaaagcttggcgaggaagtcgccgaatatccgcatccgaaactcgaggcggtg
ctgaaggagacgcatggcgtcatcatctatcaggaacaggtgatgcaagcggcccagatg
ctgtcgggttattcgctcggcgaggccgatatgctgcgccgcgcgatgggcaagaagatc
aaggccgagatggacgcgcagcgcgatcgcttcgtgagcggtgctgtcgagcgcggcgtc
aagaccgaaacggccaatacgatcttcgatcttctggccaaatttgccgattacggcttc
aacaaaagccacgcggccgcctatgccctgatcgcctatcaaaccgcttatctgaaagcc
aattatccagtcgagttcctcgccgcctcgatgacgctcgataaagccaacaccgacaag
ctgtcagaatttcgcaacgaggcgcggcggctcggcatcaaggttgaaccaccttcggtg
aaccggtccggtgtcgatttcgacgtcacgcgggacgatccggccgccatcgtctacgct
ttgtcggccatcaagggcgcgggagaagggcagatcgccgccatcgtcgcggcgcggggg
agtaaacgcttcagctcgctcgccgattttgcgttgcggctgacgtctcgcgacgtcaac
aaaaaggtgctcgagagccttgcggccgccggcgccttcgatgagttcgagacggatcgg
gcgcgcgtctttgccggagtggaacaagtgctcggcatggcgacgcgtgcgggcgacgag
cgccgcgccgggcagagtgctttattcggcgcctccgacgtcgaaagcgccttccgctta
ccgctggccgatgcatggcccgccgccgaacgattgcgccgtgagttcgatgcagttgga
tttttcctgtcgggtcatccactcgacgattacgaagccattctcaaacgactccgcatc
cagcgctgggcggagttctcacgtgccgtgaagggcggtgcgacgagcgcgcgccttgct
gcgaccgttctcgaccggatggagcgccggaccaaatccggcaacaagatcggcatcgtc
aatctgtcggacgcgtccggtcaatatgaagcgatcatgttccaagagaccctgaacgag
catcgcgacctgttcgaaaaggggtctgccgtgttgatcacggtgcaggcgagcgctgaa
ggcgacgaggtgcggtgccgcattctcacggccgaggggctcgatcaagcggctcatcga
gcgcagaaagggcttcgtatccacgtgcgggacgtcgcgccactcgctacgattgcgagc
cgcctcgacaaaaagggcgatggcgaggtctcattcgtcgtcatgatggacgatggcctc
cgtgaggtggaggtgaagctgccgggcaagttcagcctgtcgcccctgatggctggcgcc
ttgaaggcggtgccgggcgtcgtcgctgtcgaaaacgtatga
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