Lichenihabitans sp. PAMC28606: LGH83_02770
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Entry
LGH83_02770 CDS
T07621
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03410
Base excision repair
liz03430
Mismatch repair
liz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LGH83_02770 (recJ)
03430 Mismatch repair
LGH83_02770 (recJ)
03440 Homologous recombination
LGH83_02770 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_02770 (recJ)
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LGH83_02770 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LGH83_02770 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGH83_02770 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UDL95176
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All DBs
Position
complement(580240..582033)
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AA seq
597 aa
AA seq
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MSRAFLGVEHSMLGRAWRDRLAVSEAVQADAIRQTLGLSDLLSRVVAARGQTAASAPGFL
APSLREAMPDPNGLSGMEAAVERLAGAVVAGEAVAIFGDYDVDGACSAALLSDYLTAAGL
RPAIHIPDRILEGYGPNIPAIQALKRAGADLLVTVDCGTTSTEPLEEARRLGLDCVVIDH
HQAPLDLPPAQAIVNPNRQDDLSGLGHLCAAGVVFMVLVALHRDLRARGFWAGKPMPDLL
AALDLVALATVADVVPLVGLNRAFVAKGLAVMRLRARPGLAALFDIAGTEGPPTAFHLGF
LVGPRINAGGRIGDAALGARLLLTRDPLDARRIAEQLDQLNRERRSIEASASEEAEAAAF
ALAETTDAPAYAALVTSGAGWHPGVVGLVASRLRERYERPAFAISLDGLVGTGSGRSIPG
VDLGRIVRAAVETGLLIKGGGHAMAAGITIEAARIDAFRLFLHEQMGDAVALSRAASALE
IDAALSAAAASIDTIESIETAGPFGSGNPEPVFAFPNHRLTSVVPVGTDHLRLTAAGPDG
TRLSGIAFRAASSPLGVELRAQQGRLVHLAGTLTVSRWGGSGRAELRVMDAAVPEQR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcgcttttctcggagtcgaacactcgatgctcggccgtgcctggcgcgatcgg
cttgcggtctccgaagccgtgcaggccgatgcgattaggcagacgctgggcctctccgat
ctgctctcccgcgttgttgcggcacgcggtcagacggcggcctctgcgccgggctttctg
gcgcccagcctgcgcgaggcgatgcccgacccgaacggcctgagcggcatggaagcagca
gtcgagcggctcgccggagcggtcgtggctggggaggcggtcgctatctttggagactat
gacgtcgacggcgcctgttcggcagctctcctgtccgactatctcacggccgccggactg
cgacccgcgatccacattcccgaccgtatcttggaaggctacgggccgaacatcccggcc
attcaggcgctgaaacgcgcgggggcggatctgctggtgaccgtcgattgcgggacgacc
agcaccgaaccgctcgaagaagcccgtcgtctcggcctcgattgcgtggtgatcgatcat
catcaggcgccgctggatcttccaccggcgcaagcgatcgtgaaccccaatcggcaggac
gatctctcaggccttggtcacctctgcgcggccggtgtcgtcttcatggtgctggtcgcg
ctgcatcgcgacctgagagcgagggggttctgggccggcaagccgatgcctgatctgctg
gcggcgctcgacctcgtcgccttggcgacggtggccgatgtcgtgccgctggtcgggctc
aaccgcgccttcgtggcgaagggcctcgcggtgatgcgtctacgcgcccggcctgggctt
gcggctctgttcgacatcgccgggaccgagggtccgccgacggcatttcatctcggcttt
ctggtagggccgcgaatcaatgcgggtggccggatcggagacgcggcgctcggagcgcgg
ctgctgctgacgcgcgatccactcgacgcgcggcgcatcgccgaacagcttgaccaactc
aatcgcgagcgccgctctattgaagcgagcgccagcgaagaagccgaggccgcagccttc
gcgctcgccgaaacgacggacgcaccggcctatgcggctcttgtcacgagcggtgcgggt
tggcatcccggggttgtcggcctcgtcgcgtcgcggttgcgcgaacgctatgagcggccc
gccttcgcgatcagtctcgatgggttggtcggcaccgggtccggacgatcgattccgggc
gtggatctcgggcgtatcgtgcgggctgcggtcgagaccggcttactgatcaagggcggc
ggccatgccatggcggccggcatcaccatcgaggcggcacggatcgacgcgtttcggctg
ttcttgcatgagcagatgggcgacgcagttgcactgtcgcgcgccgcaagcgcgctcgag
atcgacgcggccctctcggccgccgccgcatcgatcgacacgatcgaatcgatcgagaca
gccggcccgttcggcagcggcaatccggagccggtcttcgctttcccaaatcaccgcctg
accagtgtcgtgcctgtcggcaccgaccatctgcggctgacggcggcgggcccggatgga
acacggctgagcggcatcgcgtttcgtgcggccagcagcccgctcggcgtcgagcttcgc
gcccagcagggccgtctcgtgcatctggccggcacgttgacggtcagtcgctggggcgga
agcgggcgcgccgaactgcgcgtcatggacgcagcggttcccgagcagcgttga
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