Lichenihabitans sp. PAMC28606: LGH83_04250
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Entry
LGH83_04250 CDS
T07621
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGH83_04250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
liz03019
]
LGH83_04250
03009 Ribosome biogenesis [BR:
liz03009
]
LGH83_04250
Enzymes [BR:
liz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LGH83_04250
Messenger RNA biogenesis [BR:
liz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LGH83_04250
Ribosome biogenesis [BR:
liz03009
]
Prokaryotic type
rRNA processing factors
LGH83_04250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UDL95446
LinkDB
All DBs
Position
908337..911588
Genome browser
AA seq
1083 aa
AA seq
DB search
MANKMIIDAAHPEETRVVVLRGNRVEEFDFEAANKKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLDEEARSHEDEEDDTRSPSANNSGNGNGNGG
HRRSRRHRRGDRPASAEKRANPNGDSISSDAIGSDLVSSDPTMAADGQDDTGLELGGLGQ
AAGSEDPSAADFLAIQADEPTDSLFQDAEIHAGESQMEVPDQALSETTEGVDHADDAGFD
NADRSEDDDSRDDVTTFEHGFEAAHEPAENDQAGHEDRKSDGQHHDPEQNDAEEDGVEQL
GGDAMEDVPQRTSRPRRHYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVL
MPNTARGGGISRKITDAEDRKRLKAIAQELEVPEGMGIILRTAGAARGMPEVKRDFEYLM
RMWETVRETTLKSSAPTLVYEEGSLIKRSIRDLYGKEVDEVIVAGDEGYREAREFMRLLM
PTHTKNVIAYRDPQPIFAKSGVEAQLDAMFSNQVVLRSGGYLVINQTEALVAIDVNSGRS
TREHNIEDTALRTNLEAADEIARQLRLRDLAGLIVVDFIDMEEGRNDRAVERRIKDALKN
DRARIQIGRISHFGLLEMSRQRMRTGVLEGSTVMCPHCAGSGTVRSVSSIALHVLRLLED
SLIKSAAYNLVVRTRPDVALYILNQKRANLLDLEARFGVCINVFSDPLMNGTVYHAIDRG
AEATPPQLLSFRPDVSHAASAIDALVQEEDDLDAAAEEFEEVETETGSEAQPVQARDGQT
GERTDGEGDGSRRRKRRRRRRGRDNQSQFATSEGEQQGGEAGLDETDGTDEEAGELAFEG
REGDNIAVEVDRSTGDHEVGTVADVTADPIVAETTTDVPVLSLADTDQPVSASIEPATVE
PAVLADTASDEAGTADAAPVEAPRRRRPRRPTRSAEAAAASVADLDMGSPAASLDAATDP
VDEVVAPARRPRRSRSRVAEAVTEVSADLSRPSADRDVGSDTVEHHPAEVTASREQPELP
LSNASPVVPAPATPLESVAEAPTPHAAPSEPAATEAEAEVVDPDRPKRSGWWQRAKATFT
TGS
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggccaataaaatgatcattgacgccgcacacccggaggaaacccgcgtcgtggtgctg
cgcggcaaccgggtcgaggaattcgatttcgaagccgccaataagaagcagttgcgcggc
aacatttatctcgcgaaggtcacgcgcgttgaaccgtccttgcaggccgccttcatcgaa
tatggcggcaaccgccacggctttctggccttttcggaaatccaccccgattattaccag
atccccgtcgccgatcggcaggcgcttctcgacgaagaagcccgctctcacgaggacgag
gaagacgacacccgctcgcccagcgcaaacaacagcggtaacggcaacggcaatggtggc
catcggcgcagccggcggcatcgtcgcggcgatcgcccggcttcggccgagaagcgcgcc
aaccctaacggagactcgatttcgagcgacgcgatcggcagcgatctggtctcgtccgat
ccgacgatggcggcggacggccaggacgacaccggccttgagctaggcggcctcggtcag
gcggcgggttccgaggacccgagcgcggccgattttctcgccatccaggctgatgagccg
accgactccctctttcaggatgcggagatccacgctggcgagtcgcaaatggaagtgccg
gatcaggctttgtccgagacgaccgagggtgtcgaccatgccgacgatgccggcttcgac
aatgccgaccgcagcgaggacgacgactcgcgcgacgatgtgacgacctttgagcatggc
tttgaagccgcgcacgagccggcggagaatgaccaggccggccacgaggaccgcaagagc
gacggccagcatcacgaccccgagcagaatgacgccgaagaagatggcgtcgagcagctg
ggcggagacgccatggaagacgtgccgcagcgcacgtcacgcccgcgccgccattacaag
atccaggaggtgatcaagcgccgccaggttctgctggttcaggtcgtcaaggaggagcgc
ggcaacaagggcgcggcgctgacgacctatctgtcgctcgccggtcgctattcggtgctg
atgccgaacacggcgcgtggcggtggcatctcccgcaagatcaccgatgcggaggatcgc
aagcgcctgaaagcgatcgcgcaggaattggaagtcccggaaggcatgggcatcatcctg
cggacggccggtgccgctcgcggtatgcccgaggtgaagcgtgacttcgaatatctaatg
cgcatgtgggagacggtgcgcgagacgacgctgaaatcatcggcgccaacgctcgtttat
gaggaaggctcgctgatcaagcggtcgatccgcgatctctacggcaaagaagtcgatgaa
gtgatcgtggccggcgacgaaggatatcgtgaagcccgcgaattcatgcgcctgctgatg
ccgacccacaccaagaacgtgatcgcctaccgcgacccgcagccgatcttcgccaaatcc
ggcgtcgaggcgcaactcgacgcgatgttctcgaaccaggtggtgctccgctcgggcggc
tatctggtgatcaaccagaccgaagcactcgtcgcgatcgacgtgaactcgggtcggtcg
acccgcgagcataatatcgaggatacggcgctccgcaccaatctcgaagccgccgacgaa
atcgcgcgccagttgcggctgcgcgatctcgccggcctgatcgtggtcgatttcatcgac
atggaagaagggcgtaacgatcgcgccgtcgagcggcgcatcaaggacgccctgaagaac
gatcgcgcccgcatccagatcggccgcatctcacacttcggtttgctcgagatgtcgcgt
cagcgcatgcggaccggcgtgcttgaagggtcgaccgttatgtgcccgcattgcgccgga
tccggcacggttcggtcggtgtcgtcgatcgcgctgcacgtgctgcgcctgcttgaagat
tcgctcatcaagtcggccgcctacaacctcgtggttcgcacccggcccgacgtcgcgctc
tacatcctcaatcagaagcgcgccaacctgctcgacctcgaggcccggttcggtgtctgc
atcaacgtcttctccgatccgctgatgaacggcacggtctatcatgcgatcgaccggggt
gccgaagcgacgccgccgcaattgctgagcttccggccggatgtgagccacgcggcttcc
gccatcgatgctctggtgcaagaagaagacgatctcgacgccgccgctgaggaatttgag
gaggtcgagaccgaaaccggctccgaggcccaacctgttcaggctcgcgacggccagact
ggcgagcgtaccgacggtgagggcgatggatcgcgccgccgcaagcgtcgtcggcgtcgg
cgtgggcgtgacaatcagagccagttcgcgacatccgagggtgaacagcaaggtggcgaa
gccggtctcgacgaaacagacggcacggacgaagaggctggcgaactcgccttcgagggt
cgcgagggcgacaatatcgccgttgaggtcgatcgcagcaccggggatcacgaggtcggg
actgtagcggacgtcacggccgacccgatcgtcgccgaaacgacgaccgacgttccggtt
ctgtcgttggccgacacggatcagcccgtctctgcctctatcgaacctgcaaccgtcgaa
cctgcggtgcttgccgacacagcatcggatgaagctgggacagcggatgccgcaccggtc
gaagcgccgcgccgccgtcgcccgcgccgcccaacccgcagtgcggaggcggcagccgcc
agcgtggccgatctcgacatgggatcccctgccgcgagcctcgatgccgccaccgacccg
gtcgatgaggtggtcgcgccagcccgacgtccccgccggtcacgttcgcgggtcgccgag
gccgtgacggaagtgtcggccgatctcagccgcccgtccgccgaccgtgatgtcggttcg
gatacggtcgagcaccacccagcagaggtgaccgcgtcgcgcgagcagccggaattgccg
ttgagcaacgcgtcaccggtggtccccgcacctgcgaccccgctcgagtctgtcgccgag
gcgcccacccctcatgctgccccgagcgagcccgctgcgaccgaagctgaggccgaggtt
gtcgacccggaccggccgaagcggtcaggctggtggcagcgcgccaaagcgaccttcacg
acaggatcgtga
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