Lichenihabitans sp. PAMC28606: LGH83_04965
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Entry
LGH83_04965 CDS
T07621
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LGH83_04965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
liz03021
]
LGH83_04965
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_04965
Enzymes [BR:
liz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LGH83_04965
Transcription machinery [BR:
liz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LGH83_04965
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LGH83_04965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
UDL95576
LinkDB
All DBs
Position
complement(1047966..1048982)
Genome browser
AA seq
338 aa
AA seq
DB search
MIHKNWQDLIKPNKLEVIVGDDPKRTATLVAEPLERGFGLTMGNSLRRILLSSLQGAAVT
AIHIDGVLHEFSSIPGVREDVTDIVLNVKDIAIKMQGEGPKRVVLKKQGPGRVTAGDIAT
VNDVIVLNPDLVICTLDEGAEIRMEFTVNTGKGYIAADRNRSEDAPIGLIPVDSLYSPVR
RVSYRVENTRAGQILDYDKLTMTIETNGGITPEDAIAYAARILQDQLNVFVNFEEPKREE
VSAAIPELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKSEAEMLRTPNFGRKS
LNEIKEVLAQMGLHLGMEINGWPPENIDELAKRFEEHY
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgattcacaaaaactggcaggatttgatcaagccgaacaagctcgaggtcatcgttggc
gatgatccgaagcggaccgcaaccctcgtggcggagccgctcgagcgcggctttggtctt
acgatgggcaattcacttcggcggatcctgctctcgtcgttgcagggtgctgccgtcacg
gccatccacatcgatggcgtgttgcatgaattctcgtcgatcccgggcgttcgcgaggac
gtgaccgacatcgtcctcaacgtgaaggacatcgcgatcaagatgcagggcgaaggcccg
aagcgtgtcgtgttgaagaagcagggcccgggtcgggtcacggccggggatattgcgacc
gtcaatgacgttatcgtgctcaaccccgatctggtgatttgtacgctcgacgagggtgct
gaaatccggatggagttcacggtcaacaccggcaagggctacatcgcggcggatcgtaat
cgctcagaagatgcaccgatcggtctcattccagtcgacagtctgtattcgccggttcgg
cgcgtcagctatcgcgttgagaatacccgcgcgggtcagatcctcgactatgacaagctg
accatgacgatcgagacaaacggcggcattacgcccgaggatgcgatcgcttacgcggcc
cgcattctgcaggaccagctcaacgtcttcgtgaacttcgaagagccgaagcgcgaagag
gtttcggcggcaattccggaattggcgttcaacccggcgctcttgaaaaaggtcgacgag
ctcgaattgtcggttcgttcggcgaattgcttgaagaacgacaatatcgtttacatcggt
gatctcatccaaaagtcggaagccgaaatgcttcggaccccgaacttcggtcgaaagtcg
ttgaacgagatcaaggaagtgttggcccagatgggtctgcatctcgggatggaaatcaac
ggttggccgccagagaatatcgacgaactcgctaagcggttcgaagaacactactaa
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