Lichenihabitans sp. PAMC28606: LGH83_05545
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Entry
LGH83_05545 CDS
T07621
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGH83_05545 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
liz03019
]
LGH83_05545 (pnp)
03016 Transfer RNA biogenesis [BR:
liz03016
]
LGH83_05545 (pnp)
Enzymes [BR:
liz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LGH83_05545 (pnp)
Messenger RNA biogenesis [BR:
liz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LGH83_05545 (pnp)
Transfer RNA biogenesis [BR:
liz03016
]
Prokaryotic type
tRNA degradation factors
LGH83_05545 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
UDL95677
LinkDB
All DBs
Position
1146376..1148517
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AA seq
713 aa
AA seq
DB search
MFDISREEIEWAGRKLVLETGKIARQADGAVLATYGETTLLATVVSAKSPKPGQDFFPLT
VNYQEKAFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPDGYRNDTQVVVTVLAH
DLENDPDILAMVATSAALTLSGIPFMGPIGGARVGYINNELKLNPTIDEMKTSSLDLVVA
GTHDAVLMVESEAKELSEELMLRAVMVGHKGFQPVLDMIIRLAEKAAKEPRDLVSVDKSD
VEKAVLTIAENDLRAAYGITAKAERYKAIDAAKAKVMAELVPATGEAEFTKEAVAVAFHD
VQAKVVRWNILDKGVRIDGRDLKTVRPIVSQAGILPRAHGSALFTRGETQALVVATLGTG
EDEQFIDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAA
EFPYTIRIVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFAVLS
DILGDEDHLGDMDFKVAGTSEGITSLQMDIKITGINEEIMRVALDQAKDGRLHILDEMSK
ALTGARAELGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS
SDANSIKAAIAWIKSIANDPEIGLIYEGTVVKVVDFGAFVNFFGSKDGLVHISQLAKGRV
AKASDVVKEGDKVKVKLLGFDDRGKVRLSMRIVDQVTGEDLEGKEKAEQGAAD
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacatttcccgcgaagagattgaatgggccgggcgcaagctcgtcctcgaaacc
ggcaagattgcccgccaggccgacggtgccgttctcgccacttatggcgaaaccaccctg
ctagcgaccgtcgtttcggccaagtcgccgaagcccggccaggacttcttccccctgacg
gtgaattatcaggaaaaggcctttgcggccggccgcattcccggcggttacttcaagcgc
gagggacgcccctccgagaaggagaccttggtctcccgcctgatcgatcgcccgatccgc
cccctgtttccggacggatatcgcaacgacacccaggtggtcgtgacggtgctggcgcat
gatctcgagaacgatcccgacatcctcgccatggtggcgacgtcggctgccctgacgctg
tcgggcatccccttcatgggcccgatcggtggcgcacgcgtcggctacatcaacaacgag
ctgaagctcaacccgaccatcgacgagatgaagacctcgagcctcgacctcgtggtcgcc
ggcacgcatgacgccgtgctcatggtcgagtcggaagccaaggaactctccgaggagctg
atgcttcgcgccgttatggtgggccataagggcttccagccggtgctcgacatgatcatc
cgcctggccgagaaagccgctaaggagccgcgcgatcttgtgtcggtcgacaagtccgat
gtcgagaaggccgtgctgacgatcgccgagaacgatctccgcgccgcctatggcatcacg
gccaaggccgaacgctacaaggccatcgatgccgccaaggccaaggtcatggccgaattg
gtgcccgcgactggcgaagccgaattcaccaaggaagccgtcgcggtcgcgttccacgac
gttcaggccaaggtggtgcgttggaacatcctcgataaaggcgttcgtatcgacggtcgc
gatctgaaaacggttcgtccgatcgtctcgcaggccggcatcctgccgcgtgcccacggc
tcggcgctgttcacgcgtggcgagacgcaggccctcgtggtcgcgacgctcggaacgggt
gaagacgagcagttcatcgacagcctggaaggcacctataaggagcgcttcctgctccac
tacaacttccctccctactcggtcggcgagacgggccggatgggttcgcccggtcgtcgc
gaaatcggccacggcaagctcgcgtggcgcgcgatccgtccgatgctgccgaccgctgcc
gaattcccctacacgatccgcatcgtgtcggagatcacggagtccaatggttcgtcgtcg
atggcgacggtctgcggatcctcgctggccttgatggacgcgggtgttccgctaaagcgc
ccgaccgccggtatcgcgatgggcctcatcctcgagggtgagcgcttcgcggtcctgtcc
gacattctcggcgacgaggatcacctcggcgacatggacttcaaggtggccggaacctcc
gagggcatcacctcgctgcagatggacatcaagatcaccggcatcaacgaagagatcatg
cgggtggcgttggatcaggccaaggacggccggctccacattctcgatgaaatgtcgaag
gctctgaccggcgcgcgcgccgaactcggggaattcgcaccccgcatcgaaaccctcaag
atcccgaccgacaagatccgggaagtcatcggaacgggcggcaaggtgatccgcgagatc
gtggaaaagaccggcgcgaagatcaacatcgaggacgatggcaccgtgaaggtggcttcc
tccgatgccaactcgatcaaggccgccattgcctggatcaagtcgatcgccaacgatccg
gagatcggcctcatctacgaaggcaccgtcgtcaaggtggtggacttcggcgcgttcgtg
aacttctttggctcgaaggacggtctcgtccacatttcgcagctcgccaagggtcgcgtc
gccaaggcctccgatgtcgtcaaggaaggcgacaaggtcaaggtcaagctgctcggcttc
gatgatcgcggcaaggttcgtctgtccatgcggatcgtcgatcaggtcacgggcgaagat
ctcgaaggcaaggaaaaggccgaacagggcgccgccgactaa
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