Lichenihabitans sp. PAMC28606: LGH83_06625
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Entry
LGH83_06625 CDS
T07621
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
liz
Lichenihabitans sp. PAMC28606
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
liz03032
]
LGH83_06625
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_06625
Enzymes [BR:
liz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LGH83_06625
DNA replication proteins [BR:
liz03032
]
Prokaryotic type
DNA Topoisomerases
LGH83_06625
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LGH83_06625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UDL95866
LinkDB
All DBs
Position
complement(1372467..1373642)
Genome browser
AA seq
391 aa
AA seq
DB search
MSIAEDRDPDDPQVVDPRDAAESAGLWYVTDEDQGIRRQKAGKGFSYRGPDGRKITNTET
LDRIKALAIPPAYTHVWISERADGHIQATGRDAKGRKQYRYHPLFREIRDSAKYEHVTAF
ADALPHIRDTVRRHMAEKGLSRRKILATIVYLLETTLIRVGNEDYARKNQSYGLTTLLDE
HVEVDGAGLHFEFKGKSGKMWRLDVRNKRVAAIVKACHDLPGHHLFQFLDDDKQRHSVGS
SDVNSYLREITGRDVTAKDFRTWAGTVLAAMALHEIGIIDSEAKAKKNIRAAIERVSSRL
GNTPTICRKCYIHPEILSCYMSGELMLEIKDDIEAELRSDLPKLRPEEAAVLALLESRLK
RDIDDAAAEAAKQASAPHRKGSRLQPSARDA
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcgcagaggatcgagatcccgacgacccgcaggtggttgatccgcgcgatgcg
gccgaaagtgccgggctttggtacgtgaccgacgaggatcagggcattcgtcgtcagaag
gccggcaagggcttttcttatcgcggaccggacggtcgcaagatcacgaataccgaaacg
ctcgatcgcatcaaggcgctcgcgatcccgccggcctacacccatgtctggatcagcgaa
cgagccgacggccatattcaggcgacgggtcgcgacgccaagggacgcaagcaatatcgc
taccatccgctgttccgcgaaatccgggatagcgcaaaatacgagcatgtgacggcattc
gccgatgccttgccgcatattcgggacacggttcgtcgacacatggctgagaaggggctg
agccggcgcaagatcctggccaccatcgtctatcttctcgaaacgacgctgatccgggtt
ggcaacgaggattacgcgcggaaaaatcagtcctatggtttgacgacgcttctcgatgaa
catgtcgaggtcgacggggctgggctccatttcgagttcaagggcaagagcgggaagatg
tggcggctcgacgtccgcaacaagcgcgtcgccgccatcgtcaaagcctgtcacgatctg
ccgggccaccacctgtttcagttcctcgacgacgacaaacaacgccacagcgtcggctca
tccgacgtcaattcctacttgcgcgagatcaccggccgcgacgtaaccgcgaaggatttt
cgcacctgggccggaaccgtgctggccgccatggcgctgcacgaaatcggcattatcgac
agcgaggccaaagccaagaaaaacatccgcgccgcgatcgaacgtgtctcgtcccggctg
ggaaacacgccgacgatctgccgcaaatgctacattcatccagagattctgagctgctat
atgagcggtgagctcatgctggagatcaaggatgatatcgaagccgagctacggagcgat
cttcccaaattgaggccggaagaagcggccgtgttggccttgctcgagtcgcgcctgaag
cgggacatcgacgacgctgcagcggaggccgccaaacaagcgtccgcgccgcatcggaaa
ggcagccgactacagccgagcgcgcgcgacgcgtga
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