Lichenihabitans sp. PAMC28606: LGH83_06935
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Entry
LGH83_06935 CDS
T07621
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LGH83_06935 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_06935 (ruvB)
Enzymes [BR:
liz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGH83_06935 (ruvB)
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LGH83_06935 (ruvB)
RecFOR pathway proteins
LGH83_06935 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
TIP49
Mg_chelatase
AAA_22
AAA_16
AAA_3
AAA_2
AAA_17
AAA_14
AAA_18
Rad17
nSTAND3
AAA_33
MCM
NTPase_1
TsaE
RNA_helicase
DUF815
AAA_28
NB-ARC
ABC_tran
AAA_24
NACHT
AAA_7
IstB_IS21
Cytidylate_kin
Sigma54_activ_2
AAA_PrkA
Motif
Other DBs
NCBI-ProteinID:
UDL95923
LinkDB
All DBs
Position
1445530..1446585
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AA seq
351 aa
AA seq
DB search
MSDQPRRLLTPDLRDDDHEASLRPQVLEDFTGQEALRKNLKVFVEAAKTRGEALDHVLFV
GPPGLGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTALEDRDVLFIDEIHRLNPA
VEEILYPAMEDFQLDLIIGQGPAARSVKIDLAKFTLVGATTRAGLLTTPLRDRFGIPLRL
NFYNVTELESIVRRGARVLGIGMAPDGANEIARRARGTPRIAGRLLRRVRDFAVVDDEPI
ITRKVADRALKLLDVDDVGLDQMDRRYLDAVSISFGGGPVGIETIAAALSEPRDAIEDII
EPFLIQLGFLHRTPRGRMLTPHAFRHLGLAVPSQAPVANQIGLFDLGDDVG
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagaccagccccgacgcctgctcaccccggaccttcgcgatgacgaccacgaggcg
tcgctgcggccgcaggtgctggaggacttcaccggccaggaggcgcttcgtaagaacctc
aaggtgttcgtcgaagccgccaaaacccggggcgaagcgctcgatcacgtgctgttcgtc
gggccgcccggccttggcaagacgacgctggctcaaatcgtggcgcgcgaactcggcgtc
aactttcgctcgacctctggtcccgtcatcgccaaggcgggcgaccttgcggcgcaattg
accgcgctcgaagatcgcgatgttttgtttatcgacgaaattcatcggctcaatccggcc
gtggaggagatcctctatccggccatggaagatttccagctcgatctcatcatcggccaa
ggtcctgcggcccggtcggtgaagatcgatctcgccaaattcacgctcgtgggcgcgacc
acgcgggcgggcttgctgacgacgcctctgcgcgatcgcttcggcatcccgctgcggctg
aatttctataatgtaaccgaactcgaaagcatcgtgcggcgcggggcgcgggtgctgggg
atcggcatggcgcccgatggcgccaatgagattgcgcggcgggcgcggggcacgccccgg
atcgcgggacgcttgctccgccgggtgcgcgattttgccgttgtcgatgacgaaccgatc
atcacccgcaaggtcgccgaccgcgccctgaaactgctggacgtcgacgatgtcggcctc
gaccagatggatcgacgttacctcgacgccgtttcaatctcgtttggtggcggcccggtc
ggcatcgagacgattgcggccgccttgtcggagcctcgcgacgcgatcgaagatatcatc
gagccgttcctgatccagctcggctttctgcatcggacgccgcgcggccgcatgctgacc
ccgcatgcgttccgtcacctggggcttgcggtcccctcgcaagcgcctgtcgccaatcag
atcgggctgttcgatctcggagacgatgtcggatga
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