Lichenihabitans sp. PAMC28606: LGH83_07545
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Entry
LGH83_07545 CDS
T07621
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
liz
Lichenihabitans sp. PAMC28606
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_07545 (addB)
Enzymes [BR:
liz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGH83_07545 (addB)
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LGH83_07545 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
UDL96039
LinkDB
All DBs
Position
1589945..1593085
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AA seq
1046 aa
AA seq
DB search
MRHPRLFTIPPGAPFLDTLATTLLDGTLVPGFSAAAGPLGLASATIFVPTRRAARALAAT
LASHIAAPSVLLPRILPLGGLDAVETDVLFDDPGFDDPLTPDLPIAIGDLTRRMIMTRMI
LGWAQAVRRAIISVDGEGRRTLHANEDLLVATSAADAWALSGDLAALSDELLTEGIGWAS
IEPLGTDAFDRYWRITLDFLNIAIAGWPAILAERGEVDRAARQIALIDSEIRRLEHTATG
PVIVAGSTGSNKATARLIAAISRLPQGAVVLPGLDHSLDEPSWRAIAGQNGADPAASHPQ
ATLKRLLGTIGVERDAVVPLGMVPPTLAMRRRFVSEAMRPAETTDLWRAFADQAEPLDLE
AALADVLVIEAADEREEALALAIAMREALEQDGTAVLVTPDRALGRRVREELARWSIEID
ESGGEQLGTTPAGAFARLVVDCALSDLAPVEVLALLAHPLARFGRARHAVADLARTLEIA
ILRGVLPPRALHDPAGLVERARAKRQQPYAPDPLKRLDEAAFDRLAAFLADVTAALAPVH
RLGAGTPLPDWLDAHAEAIWTMTLTPDGETAMTGIDGHAVAALFDALREAADAAITLDGA
GYAALFDRFAAETPVRGPNRSHPRLKILGLLEARLLSADLVLLAGLDETIWPPLVQTDAF
LNRPMRAALGLPPPERRIGQTAHDLDMALGQPRVILSRARKRGGAPTVPSRFLQRMAAVA
GPHWATCRQRGSRYVALAAALDRPAESQTLKRPAPRPDVALRPTRLSVTRIETLRRDPYA
IYAESILKLRPVDPIGAIMGPREYGTDFHAVLRDFTRHYAEGPLPPGAADDLLGRAETIF
EGSLDEPLFRSFLWPRIAGWTRAFVAWEAGRRARAAQLAVEERGELLIPLSDGSVFKLTA
NADRIETGPDGLVTIIDYKTGASPSLSAVKVGFAPQLTLEAAMVERGAFPAIGHGRRVEG
ATYVKFGTSDSVELRALTWKDRSFEDVVADHFEGLVQLLDSFRDPATGYPARPYPQFAAR
FNAYDHLSRVKEWSAAGGDDDGEDAA
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgcgacacccccggctgttcacgatcccgccgggcgcaccgtttctcgatacgctcgcc
acgaccctgctggacggaacgctggtgcccggtttttcagcggcggccggcccgctcggg
cttgcctccgccaccatcttcgtgccgacccgtcgcgccgcccgagccttggccgcaacc
ctcgccagccacatcgcggcgccctcggtcctgctgccccgcatcctgccgctcggcggg
ctcgatgcggtcgagacggacgtgctgttcgacgatcccggtttcgatgatccgctcacg
cccgacctcccgatcgcgatcggtgatctcacccgccgcatgatcatgacccgcatgatc
cttggctgggcgcaggccgtgcgacgcgccatcatctcggtcgatggcgagggtcggcgc
acgctccacgccaacgaagatcttctggtcgccacctcggcggccgatgcctgggcgtta
tcgggcgatctcgccgcgctcagcgacgagttgctgaccgaaggcatcggttgggccagc
atcgagccgctcggcaccgatgcgttcgatcgttactggcggatcacgctcgactttttg
aacatcgccatcgcaggctggcccgccatcttggcggaacgcggtgaagtcgaccgcgcg
gcgcggcagatcgcgctgatcgactcggagatcaggcggctcgaacataccgcgaccgga
ccggtgatcgtggccggatcgacgggatccaacaaggcgacggcgcgcttgatcgcggct
atttcgcgcctgccgcaaggggccgtcgtgctgcccgggctcgatcacagcctcgacgag
ccgagttggcgcgccatcgcggggcagaacggtgccgatccggccgccagccatccgcaa
gccacgctgaagcgcctgctcggcacaatcggggtcgagcgcgacgcggtcgtgccgctc
ggcatggtgccgcccacgcttgcgatgcggcggcgcttcgtcagcgaagcgatgcgtccc
gccgaaacgaccgacctgtggcgggcctttgcggaccaagcggaaccgctcgatctcgag
gcggccctcgcagacgtgctcgtgatcgaggccgccgatgaacgcgaagaagcgctggcg
ctggcgatcgcgatgcgcgaggcgctcgagcaggacggcaccgccgtgctcgtgacgccg
gaccgcgcgctcggccgacgcgtccgcgaggaacttgcccggtggtcgatcgagatcgac
gaatcgggcggcgagcaactcggaacgacgccagcgggcgctttcgcgcgcctcgtggtc
gactgcgccctgagcgatctcgcgcccgtcgaggtgctggctctcctggcgcatccgctc
gcccggttcggtcgagcgcgccacgctgtagcggacctcgcccggaccttggagatcgcc
atcctgcgcggagtgctgccgccgcgcgctctgcatgatcccgccgggctggtcgagcgc
gcgcgggcaaagcgccagcaaccttatgcgccagacccgctgaaacgtctggacgaggcc
gctttcgaccggctagccgcctttcttgcggatgtgacggcggcgctcgcgcccgtgcat
cgcctcggcgccggcacgcccctacccgattggctcgatgcccatgccgaagcgatctgg
accatgacgctcaccccggatggcgaaacggcgatgaccggcatcgacggccacgcggtc
gcggccttgttcgatgcgctgcgcgaggccgccgatgcggcgatcacgctggacggagcg
ggttacgcggctctgttcgaccgcttcgccgccgaaacgcccgtgcgtggcccaaaccgc
agccatccacgcctcaaaatcctggggctgctcgaagcccggttgctgtccgccgacctg
gtgttgctggcgggactcgacgagacgatctggccgcccctggtgcagaccgacgcgttt
ttgaaccggccgatgcgcgccgccctcggcctaccgccgccggagcggcgcatcggtcag
acggcgcatgatctcgacatggcgctcggccagccgcgcgtcatcctcagtcgcgcccgc
aaacgcggcggcgccccgaccgtgccgtcgcgtttcctgcaacgcatggcggccgtggcc
ggcccgcactgggccacctgtcgccaacgcggctcccgctatgtggcgctcgcggcggcg
ctcgatcgacccgccgagagccagacactcaagcgcccggcgccgagacccgatgtggcg
ctgcgaccgacgcgcctcagcgtgacccgcatcgaaacactgcggcgcgacccttacgcg
atctatgccgagagcatcctaaaactccgcccggtcgacccgatcggcgccatcatggga
ccgcgcgaatacggcaccgatttccacgccgttctgcgcgacttcacgcgacactatgcc
gaagggccgctgccccccggtgccgccgacgacctgctcggtcgcgccgagacgatcttc
gaaggctcgctggacgagcccctatttcgctcgtttctgtggccgcgcattgccggctgg
acgcgcgccttcgtggcctgggaagccgggcgccgcgcccgtgccgcacagctggcggtc
gaggagcggggcgaattgctgattccactctccgacggatcggtcttcaagctgaccgcc
aatgcagaccggatcgagaccggccccgatggcctcgtcaccatcatcgactataaaaca
ggggcatcgccgtcgctaagcgcggtgaaggtcggcttcgcgccgcagcttacgctcgaa
gccgccatggtggagcgcggcgcctttccggcaatcggccacggccgtcgagtcgagggt
gcgacctacgtgaaattcggcacatccgacagcgtggagctgcgcgctctcacctggaag
gaccgcagcttcgaagatgtggtcgccgaccatttcgagggtctcgtgcaattgctcgac
agcttccgcgatccggcaacgggctatccggcgcggccctacccgcaatttgcggcgcgc
ttcaatgcctatgatcacctctcgcgcgtgaaggaatggtcggccgccgggggcgacgac
gacggcgaggatgccgcatga
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