Lichenihabitans sp. PAMC28606: LGH83_11610
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Entry
LGH83_11610 CDS
T07621
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03030
DNA replication
liz03410
Base excision repair
liz03420
Nucleotide excision repair
liz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGH83_11610 (polA)
03410 Base excision repair
LGH83_11610 (polA)
03420 Nucleotide excision repair
LGH83_11610 (polA)
03440 Homologous recombination
LGH83_11610 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
liz03032
]
LGH83_11610 (polA)
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_11610 (polA)
Enzymes [BR:
liz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LGH83_11610 (polA)
DNA replication proteins [BR:
liz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGH83_11610 (polA)
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LGH83_11610 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGH83_11610 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
UDL93249
LinkDB
All DBs
Position
2454949..2457972
Genome browser
AA seq
1007 aa
AA seq
DB search
MSLVSRPIKAGDHVFLVDGSSFVFRAYFQSIRQDAKYNYRADKLPTGAVRLFCGKLFQFI
REGAAGIAPTHLAIIFDKSENSFRKDLYPLYKSHRNEPPEDLLPQFPLMRQAVRAFGLEP
IEQDVYEADDLIATYARQARDAGADVLIISADKDLMQLIEPGVSMYDPASGDPKNAGSRG
ERMIAEAEVIDYFGVTPDKVVDVQALAGDPTDNVPGAPGIGIKTAAQLIGDFGTLEALLE
RAGEIKQNKRRETLTDPDKVALIRLSKQLVTLVRDVTLTVPLDQLGIHAPDGKQLVGFMK
AMEFSTLARRAAEAYGLDANTIDADPVFVGPGGWRKRNGDHQEGDYPIVAAEQPALVDQG
SETATEAAPTGPAALSAARMAEGLRTVITHSHYVTIDTVEKLDAVIAAAHLAGVVAVDTE
TTSLDPRAADLVGIALATAPGEACYIPLGHRAPSDGGLFGEGALLPGQLDAALVLQRLRP
LFEAPGVLKIAQNMKYDWLIFALHGIELKAFDDTMLLSYALDSGKNSLEGHGMDALSKRH
LGHQPIAFKDLAGSGKSFIGFARVPIDKATEYAAEDADVTLRLWRVLKPRLPADKLATVY
ETLERPMVETLARMERRGIRIDKAILSRLSGEFAQSMARLEAEIYEQAGQAFNLGSPKQV
GDILFGKMGLPGAKKTATGAWSTSAQVLDDLAEQGNPFARLILDWRQVSKLKQTYTDALP
TYADRETDRVHTSFALAATTTGRLSSSEPNLQNIPVRNEAGRKIRTAFIAAPGHKLLSAD
YSQIELRLLAHIADLPQLKQAFAEGIDIHALTASEMFGVPVEGMPSDVRRRAKAINFGII
YGISAFGLANQLGIPREEAGAYIRTYFERFPGIRAYMDATKATAKQQGYVTTIFGRRCHY
PRILASNPSERAFNERAAINAPIQGSAADIIRRAMVRMDAALAEAKLSARMLLQVHDELV
FEVPNDEIEATIPVVRRIMIDAPHPAITLSVPLQVDARAASNWDEAH
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcgtttcacgccccatcaaagccggcgatcacgtgttcctggtcgatggctcg
tccttcgtgttccgcgcctatttccagtcgatccggcaggatgcgaaatacaattaccgg
gccgacaagctgccgacgggcgcggtgcgattattctgcggcaagctgttccaattcatc
cgcgagggagcggccggcatcgcgccgacgcatctcgccatcatcttcgacaaaagcgag
aactcgttccgcaaggacctctatccgctttacaagagccaccgcaacgagccgcccgag
gacctgctgccgcaatttccgctgatgcgacaggccgtgcgggcctttgggctggagccg
atcgagcaggatgtctacgaggccgacgacctgatcgcgacctatgcccggcaggcgcgc
gacgcaggcgccgacgtgctgatcatctcggccgacaaagaccttatgcagctcatcgag
cccggcgtttcaatgtatgatccggcgtcgggcgatccgaagaacgccggctcgcgcggc
gagcggatgatcgccgaggccgaggtgatcgattatttcggcgtcacgcccgacaaggtg
gtggacgtgcaggcgctggcgggcgacccgaccgacaatgtgccgggcgcgccgggcatc
ggcatcaagacggcggcgcaactgatcggcgacttcggcacgctcgaagccctgttggag
cgcgccggcgaaatcaagcagaacaagcgccgcgagacgttgacggaccccgacaaggtg
gcgctgatccgcctctcgaaacaactcgtgactttggtgcgcgacgtgacgctgacggtg
ccgctcgaccagctcggcatccatgcgccggacggcaagcaactcgtcggcttcatgaag
gcgatggaattttcgaccctggcgcgccgcgccgccgaggcctacgggctcgacgccaat
acgatcgatgccgatccggtcttcgtcgggccgggcggctggcgcaagcgcaacggcgat
catcaggagggcgactacccgatcgttgcggccgaacagcccgccctggtcgaccaggga
agcgagaccgcaaccgaggcggcgccgaccggcccggcggccctttcggcggcccgcatg
gccgagggattgaggaccgtcatcacgcatagccactacgtcaccatcgatacggtcgaa
aaactcgatgccgtcatcgcggcggcgcatctggccggagtggtggcggtcgataccgaa
accacgtcgctcgatccccgtgcggccgatctcgtcggcatcgcgctcgcaaccgcgccc
ggcgaagcctgttatatcccgctcggccatcgcgcgccgagcgacggcggtctgttcggc
gaaggcgcgctgctgccgggtcaactcgacgccgctctcgtgctgcagcgcctgcgcccg
ctgttcgaagcaccgggcgtgctgaagatcgcgcagaacatgaaatatgattggctgatc
ttcgcgctgcacggcatcgaactgaaggccttcgacgatacgatgctgctgtcttatgcg
ctcgactcgggcaagaactcgctcgagggccatggcatggatgcgctgtccaagcgccac
ctcggccatcaaccgatcgcgttcaaggatctggctggttcgggcaagagcttcatcggc
tttgcccgcgtgccgatcgacaaggcgaccgaatatgcggccgaggatgcggatgtcacg
ctgcggctgtggcgagtgcttaagccccggctcccggccgacaagctcgcgaccgtctat
gagacgctcgagcggccgatggtcgagacgctggcccgcatggaacggcgcggcatccgg
atcgacaaggcgatcctgtcgcgcctgtcgggcgaattcgcccaaagcatggcgcggctc
gaagccgagatctacgagcaggccgggcaggccttcaatctgggctcgcccaagcaggtc
ggcgatattctgttcggcaagatgggcctgccgggcgccaagaagaccgcgaccggtgct
tggtcgacttcggcccaggtgctcgacgacctcgccgagcagggcaacccgttcgcccgg
ctgatcctcgattggcgtcaggtttcaaaactcaaacagacctatacggatgcactgccg
acctatgccgatcgggagaccgaccgggtccatacctcgttcgccttggcggccaccacc
accgggcggctctcctcctccgagccgaacctgcagaatattccggtccgcaacgaggcg
gggcgcaagatccgcacagcgtttatcgcagctcctgggcacaagctgctgtcggccgat
tattcgcagatcgagttgcgactgctggcccatatcgccgacctgccgcagctgaaacaa
gcctttgcggagggaatcgacattcatgcgctgacggcatccgaaatgttcggcgtgccg
gtcgagggcatgccgagcgacgtccgacggcgcgccaaggcgatcaacttcggcattatc
tacggcatttcagccttcgggctcgccaaccagctcggcattccgcgcgaggaggccggg
gcctatatccgaacctatttcgagcgtttccctggcatccgggcctatatggacgccacc
aaggcgacagcgaaacagcagggttacgtcaccacgatcttcggtcgccgctgccattac
ccgcgcattctggcctcgaacccttcggaacgcgccttcaacgaacgtgccgccatcaac
gcaccgatccaaggctcggccgccgacatcattcgccgggcgatggtgcggatggatgcg
gccttggctgaggcgaagctatcggcccgcatgctgctccaggtgcatgacgagctcgtg
ttcgaagtgccgaacgacgagatcgaggccaccatcccggtcgttcgccgcatcatgatc
gatgcgccacatccggccatcacgctctcggtgccgttgcaagtcgatgcccgggcggcg
agcaattgggacgaggcgcattga
DBGET
integrated database retrieval system
