Lichenihabitans sp. PAMC28606: LGH83_17095
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Entry
LGH83_17095 CDS
T07621
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz02020
Two-component system
liz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LGH83_17095 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LGH83_17095 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
liz03021
]
LGH83_17095 (rpoN)
Transcription machinery [BR:
liz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LGH83_17095 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_Crp_2
HTH_3
Motif
Other DBs
NCBI-ProteinID:
UDL94221
LinkDB
All DBs
Position
complement(3620232..3621773)
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AA seq
513 aa
AA seq
DB search
MALSAKLVMRQGQSLVMTPQLLQAIKLLQLSNLELASFVEEELERNPLLERAEDRPDLIE
PATNDRLDSRDAEDMSDRNWDSTDLETDHRSLEAALGTELDNTFDVDRSVKPDDFATSAD
LHGLSATSWTGSPGTGDGELSSFDTYVAAAMTLHDRLSEQLALAVHDPTDLMIGHSLIDL
IDEAGYLTEDIASVADRLGASPKRVEAVLRIVHTFEPTGIGARSLAECLELQLRENNRFD
PAIAALLANLALVAKRDYSSLRRLCGVDDDDLHEMIAEIRSLDPKPGRAFGGAPVQTVIP
DVYVWPAANGSWNVELNTDVLPRVLVNQSYHTRVTRGGPSEGDRSFVTECLQTANWLTKS
LEQRARTILKVSSEIVRQQDAFFAHGVEHLRPLNLKTIADAIGMHESTVSRVTSNKYMAS
PRGLFELKYFFTASIAATAGGDAHSAEAVRFRIKQMIDAERADDVLSDDAIVVRLKTIGI
VIARRTVAKYRESLRIPSSVERRRDKQVRAVAC
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggcactgtcggccaaactcgtgatgcggcagggccagtccctggtgatgacgccgcaa
cttctgcaggccatcaagctccttcaactctccaatctcgagcttgcgtctttcgtcgaa
gaggaactggaacgcaacccactcctcgagcgcgccgaagatcgccccgacctgatcgag
cccgcgaccaacgatcgtctcgattcgcgcgatgccgaggatatgagtgatcgaaactgg
gactcgaccgatctcgaaaccgaccatcgctcgctagaggcggcactcggaacggagctc
gacaacacgttcgacgtggaccgcagtgtgaaaccggacgattttgcgacatcggccgac
cttcacggcttatcggccacctcctggacggggagccccggaaccggcgatggcgaattg
tcgagtttcgacacctatgtggccgccgccatgacgctgcatgaccggctgagcgagcaa
ttggccctggcggttcacgatccgaccgatttaatgatcggccacagtctgatcgacctc
atcgatgaggccggctatctgacggaggatatcgcgagcgtcgcggatcgtctcggcgca
agtccgaagcgcgtggaagccgtgctccggatcgttcataccttcgagccgaccgggatc
ggagcacgttccttggccgaatgcctcgagttgcaattgcgggagaacaatcgtttcgat
ccggcgatcgcagcccttctggcaaatctggcgctcgtggccaagcgcgactattccagc
ctgcgccggctctgtggggtcgacgacgacgatctgcacgagatgatcgccgaaattcgg
agcctcgatccaaagccaggccgggcttttggaggcgcgccggtccagaccgtgatccca
gacgtctatgtttggccggccgcgaatggcagttggaatgtcgaactcaacaccgacgtg
ttgccgagggtcctcgtcaaccagagttatcacacccgggtgacccgaggcggcccgagc
gagggggatcgctcgttcgtgaccgagtgcctgcaaaccgcaaactggttgacgaagagc
ctggagcagcgtgccagaaccatcctgaaggtctcgagcgagatcgtccgccagcaggac
gcgtttttcgcgcatggcgtcgaacatcttcggccgctcaacctgaaaacgattgccgat
gcgatcggcatgcacgagtcgaccgtgtcgcgcgtgacctccaacaaatatatggccagc
ccgcgcggtctctttgagctgaaatatttcttcacggcctcgatcgcggcgactgccggt
ggcgacgcacattcggccgaagcggtccgctttcgcatcaagcagatgatcgacgccgaa
cgagccgatgacgtcctgtccgacgacgccatcgtggtgcggttaaagaccatcggcatc
gtcatcgcccgtcgcaccgtggccaaatatcgagagagcctgcgtattccctcctcggtc
gaacggcggcgagacaaacaggtgcgagccgtcgcctgctga
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