Lichenihabitans sp. PAMC28606: LGH83_17810
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Entry
LGH83_17810 CDS
T07621
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LGH83_17810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_17810
Enzymes [BR:
liz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGH83_17810
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LGH83_17810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
AAA_30
AAA_16
Cas3-like_C_2
MFD_D3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UDL94346
LinkDB
All DBs
Position
complement(3774426..3777707)
Genome browser
AA seq
1093 aa
AA seq
DB search
MSNRPVAFLAIELLDFMTREKPKGLIVAVDDDHRGEALARILGQMAPDLTCHCFPAWDCL
PYDRAPPSPDHMGRRMRVLHDLGASPQDLGITILVTTPDALVQRVPPGDAVAHQIVLRTG
TLLDVEAFAADISRLGYVHADRVDASGHVAIRGEVIDIFTAASKPFRITLIDGAITSIHR
YDPVSQRSTGAVVKIRVGAASELVQTPDGTEVERFPGVEHWLPLAYPTITTLLDMMPDAS
LMLEPKADGRIEHLFEQIAEAYRDRVAADAATPNLSHKALPPHRLFLTPDEWSERVVPRL
AAFPERQPTAVMARFCLDDKPGQAFAAYLEDARRAGLRIVLGAARERDLATLAKEAERAS
GHKPVRLDAWSERAEAKADSILLMRLSADHGFEDRDGGVALVTAADLLGHQARASSFHAV
PIPWHMGDGEFAFGDFVIHADHGIGILRGLETIETGAAAGHDAVRLDYAKGTDLLAPVEE
MDRIWRYGAEQDGITLDRLDTDAWQKRRAKISLDVTETARGLVALARRRDETAAPKLMPP
RGDYERFVAGFPYGPTPDQIHAIDDVLRDLASGRPMDRLVVGDVGFGKTEVALRAAAVAV
FAGRQVALVAPTTVLVRQHLHTVEQRFAAFGIPVAHLSRMVSAAEALAVKQGLADGSVRL
VVGTHALTRDDVVFKDLGLLIVDEEQRFGTADKARIRELGTGIHVLTMTATPIPRTLQSA
LVGLQDLSVIATPPARRRPIRTLVAPFDMATIRIALMHEKANGGQSFVVVPRIEDLNHLA
PDLAALVPELTILTGHGQMEAHEVDAAMMAFAHRKADVLLATSIIESGLDVPRANTMIVC
GAERFGLAQLHQLRGRVGRGSRQGACYLMTRSDQPLPTATEQRLATLTTLDRLGSGMAIS
ARDLDSRGAGDLLGEDQAGRLRVVGLGLYQHLLQLAIRTARDDDAENWSPEIHIETMGRL
PPDYLPEPEVRLNLYARIARTMEASDVDALGDEIQDRFGPIPEAVGALLTLARLKGLCRQ
LGIARVDGGPKAIAFTPRLGRAPDDLFAHIPMQGRAGFEVRNGRVVFDCTRAATDERLSL
AVACLELFDKSLT
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccgtccggtcgcgtttttggccatcgaacttctcgattttatgacacgcgaa
aagccaaaaggtttgatcgtcgcggtcgacgacgaccaccgcggcgaggcgctcgctcgc
atccttggccagatggcacctgatctcacctgtcattgctttccggcgtgggactgcctt
ccctacgaccgggcaccgccctcccccgatcacatgggccgccgcatgcgcgtgctgcac
gatctcggcgcgtccccgcaggatctcggcatcacgattctggtgacgacaccggacgct
ctggtccagcgcgttccgcccggcgatgccgtcgcgcatcagatcgtgcttcgcaccggc
actctcctcgatgtcgaggccttcgcggccgatatcagtcggctcggctacgtccatgcc
gacagggtcgacgcgagcggccatgtcgcgatccgaggcgaggtgatcgacatcttcacc
gcggcgtcgaaacccttccgcatcacgctgatcgatggagcgatcacgagcatccatcgt
tacgatccggtgtctcaacgaagcaccggggccgtggtcaagatcagggtcggtgccgct
tcggaactggtgcaaacaccggatggcaccgaggttgaacgctttccgggcgtcgaacat
tggctgccgctcgcttatccgacgatcacgacgctgctcgatatgatgccggacgcgagc
ctgatgctcgaaccgaaggccgatgggcggatcgagcacctgttcgagcagatcgccgag
gcctatcgcgaccgggtcgcggccgatgcggctacgccgaacctgagccacaaggcgctc
ccaccccaccgcctttttctgacgccggatgaatggagcgagcgggtcgtcccgcgcctc
gcagcgttccccgagcggcaaccgacggccgtgatggcgcggttctgcctcgacgacaag
cccgggcaagcttttgcggcctatctcgaggacgcccgtcgtgccggcttgcggatcgtg
ctcggggcggcacgcgagcgcgatctcgccaccctggccaaggaagcggaacgcgcgtcg
ggccacaagccggtgcggctcgacgcatggtccgagcgggcggaagcgaaggcggattcg
atcctgctgatgcgcttatccgcagaccatggcttcgaggatcgcgacggcggagtggcc
ttggtgaccgccgcggacctgctgggccatcaggcgcgggcctcctcgtttcacgccgtt
ccgatcccctggcatatgggagacggcgaatttgctttcggagacttcgtcattcacgcc
gaccacgggatcggcatcttgcgcggcctcgaaacgattgaaaccggcgcggctgcggga
cacgacgcggtgcgactcgattatgccaagggcaccgacctgctcgccccggtggaggaa
atggaccggatctggcgctatggcgccgagcaagacggcatcacgctcgacaggctcgac
accgatgcgtggcagaaacgacgcgccaaaatcagcctcgacgtgaccgagaccgcgcgc
ggtctcgtagcccttgcccgtcgccgtgacgagaccgccgcgccaaaactcatgccgccg
cgcggcgactacgagcggttcgtcgctggctttccctatgggccgacgccggaccagatc
cacgcgatcgacgacgtgctgcgtgatctcgcctccggccgcccgatggacaggctggtg
gtcggggatgtcggcttcggcaagaccgaagtggcgctgagagcagcagccgtggccgtc
ttcgcggggcggcaggtggcgctcgtcgcgccgacgaccgtgttggtcaggcagcatctt
cacacggtcgagcagcgctttgctgcgttcggcatcccggtcgcgcatctctccagaatg
gtctccgcggcggaggcgctcgcggtcaagcaagggctcgccgatgggtcggtgcgcctg
gtggtcggaacccatgcactgacccgcgacgacgtcgtgttcaaggatctcggcctgctg
atcgtcgacgaggaacagcggttcggcacagccgacaaggcgaggatccgtgaactcggg
acgggtatccacgtcctgaccatgacggcgacgccgatcccaagaacactgcaatcggcg
ctcgtcggtttgcaagacctcagcgtcatcgccacgcccccggcgcgacgccgccctatc
cgcaccttggtggcgccgttcgatatggcaacgatccgcatcgccttgatgcacgaaaag
gccaatggcggccaaagtttcgtcgtcgtgccgcggatcgaggatctcaaccatctcgct
ccagaccttgcggcgcttgtccccgaactgaccattttgacggggcacggacagatggag
gcccatgaggtcgatgctgccatgatggccttcgcgcatcgcaaggccgacgtcttgttg
gccaccagcatcatcgagagcgggctcgacgtgccgcgcgccaatacgatgatcgtctgc
ggcgctgaacgcttcgggctcgcacagttgcatcaattgcgcgggcgcgtcgggcgcggc
agccggcagggagcatgctatctaatgacccgctcggaccagcccttgccgacagccacc
gagcaacggctcgcaaccttgacgaccctcgatcgcctcggaagcggcatggcgatcagc
gcacgcgatctcgattcacggggcgcaggagacctgctcggcgaggatcaggccgggcgt
ctgcgtgtggtcgggctggggctctatcagcatctgctgcagctcgcgatccgcacagcc
cgcgacgacgacgccgagaattggtcacccgagatccacatcgaaacgatggggcgtctg
ccgccggactatcttccggagccggaggtccgcctcaatctctacgctcgcatcgcgcgg
acgatggaggccagcgacgtcgatgccttgggcgatgagatccaagaccgatttgggccg
attccggaggccgtcggtgcgctattgacgctcgcgcgcctcaagggactgtgccgccaa
ctgggcatcgcccgcgtcgatggcggcccaaaggcgatcgctttcacgccgcgtctcggc
cgcgcaccagatgatctcttcgctcacatcccgatgcagggtcgcgccggcttcgaagtt
cgaaacgggcgggtggttttcgattgcaccagagcggctaccgacgagaggctcagcctt
gcggtcgcatgtctcgagttgttcgacaaaagcttgacgtga
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