KEGG   Lotus japonicus: 130710171
Entry
130710171         CDS       T04348                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
lja  Lotus japonicus
Pathway
lja03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    130710171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    130710171
   03041 Spliceosome [BR:lja03041]
    130710171
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     130710171
Spliceosome [BR:lja03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130710171
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st EIF3I WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_RIG_2nd NBCH_WD40 Ge1_WD40 PQQ_3 Beta-prop_WDR19_1st DUF2844 Beta-prop_RSE1_2nd Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 130710171
NCBI-ProteinID: XP_057415325
LinkDB
Position
4:complement(68745120..68750116)
AA seq 370 aa
MCGDATNWDEDAYRESILKEREIQTQTVFRTAWAPPQTPNLHSLIAASSDGSIAAYSISA
YNLNNPIGSVKSDTDELFAEPDCIFKAHDGPAYDVKFYGDGEDALLLSCGDDGRVRGWRW
NGLTSSNCSGSSLGNDIKPVLDVVNPQQKGPWGALSPIPENNAIAVNTQGGSIFAASGDS
CAYCWDVETGKLKMVFKGHSDYLHCIVARNTYNQIITGSEDGTARIWDCKSGKCIQLINP
AKHLKLKGSVSCIGCIALDASESWLACSSGRNISLWNLPASECVSKISTRASVQDMLFDN
NQILTVGADPLLNRFDMNGAILSQIQCAPPSAFSISLNPAGVMAVGGYGCLVDVISQFGS
HMCTFHCRCI
NT seq 1113 nt   +upstreamnt  +downstreamnt
atgtgcggtgacgccaccaactgggacgaagatgcgtacagagaaagcatcctgaaggag
cgtgagattcaaacgcaaaccgttttccgaaccgcctgggctcctccgcaaacccctaac
ctccactctctcatcgccgcatccagcgacggttccatcgccgcatactccatctccgcc
tataacctcaacaatccgattggttctgtcaaaagtgatacagatgagttatttgctgaa
ccggattgtatctttaaagcgcatgatggaccggcgtatgatgtcaaattctatggtgat
ggtgaagatgctctgttgctgagttgtggtgatgatggtcgggttcgaggatggagatgg
aatggccttacaagctcaaattgttctggttcttcgctaggaaatgatatcaagcctgta
cttgatgtggtaaatcctcagcagaaaggtccttggggtgcactttcacctatccctgag
aataatgctattgctgttaatactcaggggggatctatttttgctgcttctggtgattcc
tgtgcatattgttgggatgtggaaactggtaaattaaaaatggtattcaaggggcactca
gactacttgcattgtatagttgctcgcaacacttataatcagattataacagggtcagag
gatgggaccgcacgaatttgggattgcaaaagtgggaagtgtatccaactgattaatcca
gcaaaacatttgaagttaaaaggatctgtttcatgcattggctgtattgctttggatgca
agtgagagctggttggcttgcagtagtggacggaatatatcactttggaatcttcctgca
tcagagtgtgtatcaaagatttcaactcgtgcttctgtacaggacatgttatttgacaat
aatcaaattttgacagttggtgccgatcctcttctcaatcgctttgacatgaatggtgcg
atcctttcacaaatacagtgtgctccaccatcagctttttctatctccttaaacccagct
ggggttatggcagttggaggttatggatgtcttgtggatgtaatctcacaatttggcagc
cacatgtgcacatttcattgtcgatgtatttag

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