Lotus japonicus: 130710396
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Entry
130710396 CDS
T04348
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130710396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130710396
03012 Translation factors [BR:
lja03012
]
130710396
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130710396
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130710396
Translation factors [BR:
lja03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130710396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
AAA_16
Dicer_dimer
ATPase
Motif
Other DBs
NCBI-GeneID:
130710396
NCBI-ProteinID:
XP_057415627
LinkDB
All DBs
Position
4:83165057..83175643
Genome browser
AA seq
1178 aa
AA seq
DB search
MPMPMPMAIFNRYIRFRTATTPFLTARRRLSSLPTSTVTLRLRVSSCSAALRHTRTAASL
RRSTVALPFWHQQSSTYGRFAYQDESSDEDSDVELAPSQQKQLGESTLENIDEWRWKLTM
LLRNKDDHEVVSREKKDRRDFDQLSPLATRMGLYSRQYARVLVFSKSPLPNYRPDLDDKR
PQREVTLPFTVHREVDAHLLTHLSHKATKRIGALDDSLRTSSDARGIPANDGVYEQPEPM
THNSVVKEKILQRRSLQLRQQQQDWQECPEGQKMLELRKSLPAFKAKDAFLKVVSENQVV
VVSGETGCGKTTQLPQYILETEIEAARGAACNIICTQPRRISAMSVSERVAAERGDKLGE
SVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIV
LKELLPRRPDLRLILMSATLNAELFSSYFDGAPTMHIPGFTFPVRAHFLEDVLERTGYRL
TPNNQIDDYGQEKTWKMQKQAQAFRNKKSQIASTVEDALKVADIKGYSLRTRESLSCWCP
DSIGFNLIEHVLCHIVKNERPGAILVFMTGWDDINTLKDQLQAHPLLGDQSRVLLLACHG
SMASAEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDAINNTPCL
LPSWISKAASRQRRGRAGRVQPGECYHLYPKCVYDAFADYQLPELLRTPLQSLCLQIKTL
QLGSISEFLSRALQQPEPLSVQNAIEYLKTIGALDENENLTVLGHKLSMLPVEPKLGKML
ILGAIFNCLDPILTVVAGLSVRDPFVMPADKKDLADSAKAQFAADYSDHLALIRAYEGWK
DAEARKTGYEYCWRNFLSSQTLKAIDSLRKQFFYLLKDIGLVDNNSETHNTWSREDHLVR
AVICAGLYPGVSSVVNKDKSISLKTMEDGQVLLYGNSVNGRVSKIPYPWLVFNEKVKVNS
VFLRDSTGISDSMLLLFGGNISRGGLDGHLKMLGGYLEFFMKPELAKTYLTLKREMDELI
QKKLLDPMLNIQSHDKLLSALRLLVSEDHCDGRFVFGRQAPSQSNKALKYKSGDGAEGDN
YKNQLQTFLTRAGHEPPTYKTKQLKNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAASEAI
LWLKGDTHSSGGIDHASVLLKKSSKKSRKRPFSDAKWS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgccaatgccaatgccaatggctatattcaaccgctacatccgattccgaaccgccaca
actcctttcctaaccgccaggcgcagactttcttctcttcccacctccaccgtaaccctc
cgcctccgcgtttcctcctgctccgccgccctccgccacactcgtactgctgcgagcctc
aggagaagcactgtagctctacccttctggcaccagcagagctccacttacgggcgtttt
gcctaccaggacgagtccagtgatgaggattccgatgtcgaattggctccttctcagcaa
aaacaattgggcgaatcaaccctcgaaaacattgatgagtggaggtggaagctcaccatg
cttcttcgcaataaagacgaccacgaagttgtctccagggagaagaaggaccgccgtgat
ttcgaccagctttcacctttagctaccaggatgggtttatacagccgacagtatgcgaga
gtccttgtttttagcaagtcacctttgcccaattaccgccctgatttggatgataagcgt
ccacagagagaggtaaccttgccgtttactgttcatagagaagtagacgctcatctcctt
acccatctttcacataaggctacaaaaagaataggtgctttggatgattcattgcgtaca
tcaagtgatgctagaggcattcctgccaatgatggagtttatgagcagccggagcccatg
acccataatagtgttgtcaaggagaaaatccttcaacgaagaagtttgcaactgcgtcaa
caacaacaagattggcaggagtgtcctgaagggcaaaagatgcttgaacttcgtaaaagt
cttcctgcattcaaagcgaaggatgcatttctgaaagtcgtttcagagaatcaggttgtt
gttgtctcaggtgaaactggttgtggtaagaccacacaacttcctcaatacatattagaa
actgagattgaagctgcacgtggagctgcatgtaatataatttgcactcagcccagaaga
atatctgctatgtctgtttctgaaagagttgcagcagagcgaggggataaattgggagaa
tctgttggctacaaagttcgtttggagggtatgaaagggagggatactcgtcttcttttt
tgtaccactggtgtattattgcggaggctacttgtggataggaacttaaaaggtgtaact
catgttattgttgatgaaattcatgaacgtggaatgaatgaagattttcttctcattgtc
ctgaaggaacttctccctcgtcgtcctgatttgaggttaattttgatgagtgcaacctta
aatgctgagcttttttcttcctactttgatggtgcaccaactatgcatatacctggtttt
acatttccagttcgagcgcattttcttgaagatgttctggaaaggactggatatcggttg
actcctaataatcaaattgatgactatggtcaagaaaagacatggaaaatgcagaaacaa
gctcaagctttcagaaataaaaagagccagattgcttctactgttgaggatgcattaaag
gttgcagacattaagggatatagcctacgcactcgagagtcattgtcttgctggtgtcct
gactcaattggttttaaccttattgaacacgtgctttgccacattgttaagaatgaaagg
ccaggtgctattctggtatttatgactggttgggatgatataaacactttaaaggatcag
ctccaagctcatcctttgctgggtgatcagagccgagtattacttcttgcatgccatggt
tctatggccagtgctgagcagaagttgatatttgaaaatccagaaggaggggtgaggaaa
attgttcttgctactaacatggcagagactagtattaccatcaatgatgttgtctttgtg
gtagattgtggaaaagcaaaagagacatcatatgatgcaataaataacactccttgtttg
cttccgtcttggatctcaaaagctgcttcgcgacagagaagaggaagggctggtcgtgtt
caacccggagaatgctaccatctttatcccaaatgtgtttatgatgcttttgctgattat
caattgccagagcttttaagaacacctttgcagtccttatgtctgcaaattaaaactcta
caacttggaagcatctctgagtttttatccagagctttgcagcagccagagcctctctcg
gttcaaaatgctattgaatatttgaagactattggagccttagatgagaatgaaaatttg
acagttctagggcacaagttgtcgatgcttcctgtagaacccaaacttggcaagatgctc
attttgggagctatcttcaactgtttggatcccatattgactgttgtcgctgggcttagt
gtgagagatccatttgtaatgccagctgataagaaagatcttgcagactctgctaaggcc
caatttgctgctgactatagtgatcatcttgcacttatccgagcttatgagggttggaag
gatgctgaagcacggaaaactggttatgagtattgttggcgaaattttctttcttctcaa
acacttaaagcaattgactctcttcgaaagcaatttttttacttgctcaaagatattggt
ctggttgataacaattctgaaacccacaatacatggagtcgtgaggatcatctagtccga
gcagttatctgtgcgggtttgtatcctggagtatcctctgttgtgaacaaagataagtca
atatcactgaaaacaatggaggatggtcaggttcttctgtatggtaactctgtaaatggc
cgtgtatccaaaattccatacccatggttagtgtttaatgaaaaggtgaaagtgaattca
gtattccttagggattcaactggtatatctgattccatgctgctcttatttggtgggaat
atatccagaggcggattagatggtcacctgaaaatgttgggagggtatttggagtttttc
atgaaaccagaattagccaagacttacttaactctgaagagggaaatggacgaacttata
cagaaaaaacttctggatcccatgttgaatatacaatcacatgacaagcttctttcagct
ttaagattgttggtatcagaggaccattgtgatggcagatttgtctttggtcgccaggcc
ccatcacagtcaaataaggcactgaaatacaaaagtggtgatggagctgagggtgataat
tataaaaatcagcttcaaacattccttaccagggctggacatgaaccgccaacttacaag
acgaagcaactaaaaaacaaccaattccgttctactgtcatattcaacggcttggacttt
gttggtcagccatgcaatagcaaaaaactggcagaaaaatctgctgcttccgaggctatt
ctatggttaaaaggggatacccattcttctggtggtattgaccatgcatctgttctactg
aaaaagagcagcaagaaaagtagaaaaagaccgtttagtgatgctaaatggagttga
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integrated database retrieval system
