Lotus japonicus: 130710537
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Entry
130710537 CDS
T04348
Name
(RefSeq) uncharacterized protein LOC130710537 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130710537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130710537
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130710537
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_19
TPR_12
TPR_1
Coatomer_E
ARM_TT21
ARM_TT21_N
TPR_8
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
130710537
NCBI-ProteinID:
XP_057415825
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Position
4:64571486..64578191
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AA seq
860 aa
AA seq
DB search
MENRDSSSSSPSSATNRDASSATDADDGIFTVTVALAKDAALHFQSGKFAECAEVLHQLL
QKKQDDPKVLHNIAIAEFFRDGCSDPKKLLEVIKGIKRTNDEHTQTSGEQGESLNNAGSK
DVSGSKGSNPSALQFSGANSTTTIHKDEFDSSVAMLNTAIIWFHLHDYAKTLSVLEPLFQ
NIEPVDEQTTALHICLLLLDASLACHDASKSADVLTYLEKAFGVSSVSQGDSGNTAQQQS
ANLITKSAPVTLSASAADASSSDLGSTANASENHLSRAESEDTLDYEAMIVDMGGQSLAR
AMGPSSNDISRASVDRFSTVDLKLKLQLYKVQFLLLTRNLKLAKREVKLAMNIARGRDSP
MALLLKSELEYARGNHRKAIKLLMASSNRTDTVFSSIFNNNLGCIYYQLGKYQTSSLFFS
KALTNCSSLRKDQPLKLATFSQDNSLLIMYNCGVQYLACGKPVLAARCFQKASLVFYKQP
LLWLRLSECCLMALEKGLIKSNRVPSENLEVGVCVVGMGKWRQLVVQDQIPGKGNVDSSE
GNDCFSSENGRQKLSMSLARQCLLNALHLLDSYSTNCLKSGLPSNSSVEEIDPNEVSLSK
SSNLKNLHGVDSKAFSVAVGLGQVNSNGDVKEQKGGTSQELIQNSLSYYEDVRRRENQLI
KQAVLANLAFVELELDNPVKALSVAKRLLELPECSRIYIFLGRVYAAEALCLLNRPKEAA
ELLSIYLSGGNDVDLPFSQEDCEKWQAERTAEFEEVNGGSTATNNSSFEDTRRIVFLKPE
EARATIYANFAALSAMQGEFEKANVLVTQALSILPNSPEAILTAVYVDLLVGKPQEALAK
LKSCSRIRFLPSGVALNKSS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcgagattcgtcatcgtcgtcgccgtcgtccgccaccaatcgcgatgcttcc
tccgccaccgacgccgacgacgggattttcacggttactgtcgcgcttgctaaagatgct
gcgttgcattttcagtctgggaagttcgctgaatgcgctgaggttttgcaccagcttttg
cagaagaagcaggacgatccgaaggtcctccataatattgcaattgcggaattctttcga
gatggttgttcagatcccaaaaagttgcttgaagtaattaaaggaatcaagagaacaaat
gatgagcatactcagacttctggagaacaaggagaatcacttaacaatgccgggagtaaa
gacgtttcgggatccaaaggaagtaacccttctgcacttcagttttcaggtgcaaatagc
accaccacaattcataaagatgaatttgactcttctgtggcaatgctaaacactgccatt
atctggttccatcttcatgactatgcaaagacattatcagttttggaacccctcttccaa
aatattgaacctgtagatgagcagacaacggctctacatatttgccttttgctgcttgat
gctagccttgcttgccatgatgcatcaaaatcagctgatgtgttgacttatctggaaaaa
gcattcggtgttagtagcgtgagtcaaggtgacagtgggaacacagcacaacagcaatct
gcaaatctaattacaaagtctgcaccagtcaccttgagtgcatcagctgctgatgcatcc
agttctgatctagggtcaactgctaatgcatctgaaaatcatctgtccagagctgaatct
gaagatacacttgattatgaggccatgattgtggatatgggtggacaaagtttagccagg
gcaatgggtccatcttcaaatgatatttctagggcttcggttgacaggttttcaactgtt
gatttgaagcttaagttgcagctttacaaggttcagtttcttcttcttactaggaaccta
aagctagccaagagagaagttaagctggctatgaacattgcacgtggaagagattcacct
atggctcttcttctgaaatctgagcttgaatatgctcgtggtaaccaccgcaaagcaata
aagctattgatggcatcaagtaatcgaacagacacagttttctcaagcatttttaacaac
aatcttgggtgcatttactatcagctcgggaaatatcagacatcctcattattcttctca
aaggctttaactaattgttcgtccctgcgaaaggaccaaccattaaagctagccactttc
tcgcaggataattctctccttataatgtacaactgtggtgtgcagtacttggcttgtggg
aagccagtacttgctgctcggtgcttccagaaggcaagtttggtcttttacaaacagcct
ctcttgtggctccgactctcagaatgctgtctgatggctttagaaaagggcctaataaaa
tcaaatcgggttccttcagaaaatttagaggttggagtttgtgttgttgggatgggaaaa
tggaggcaacttgttgtgcaagatcaaattccaggaaaaggaaatgtggactcatctgaa
gggaatgattgcttttcaagtgaaaatgggcggcagaagttatcgatgtcccttgcccga
cagtgcctcttgaatgctctgcacttgctggactcctacagtacaaattgtttgaagtct
ggtttgccctctaattcttcagtggaagaaattgatccaaatgaagtgtcactgtcaaag
agttcgaatcttaaaaacttgcatggggttgattcaaaggcattttctgtagcagtaggc
ttaggtcaggttaattcaaatggggacgtaaaagaacaaaagggaggaactagtcaggaa
ctcattcagaactctctctcctattatgaagatgtccgtagaagagaaaatcaattgatc
aagcaagctgttcttgctaatttagcatttgtggagctagaattggacaatcctgtgaag
gcactgtcagttgcaaaacgtctcctagaacttccagaatgttccaggatttacatcttt
ctaggtcgtgtttatgcagcagaggctctctgcttgctaaacagaccaaaagaagctgct
gagctcttgtcaatttatttgtcagggggaaacgatgttgatttgccattcagccaagag
gactgtgagaaatggcaggcggagaggactgctgaatttgaagaggtaaatggaggatcc
actgctaccaataattcttcttttgaggacactcgaaggattgttttcctcaaaccagag
gaggcacgggctacaatttatgcaaacttcgcagcattatctgccatgcagggtgaattt
gagaaagcaaatgtattggttacgcaggcattgtccatattacccaacagtccagaagcc
atacttactgcagtttatgtggatctcttggttggcaagccacaggaagctctagccaaa
ttaaaaagttgtagccgaattaggttccttcctagtggagtagcattgaataaatcttct
tga
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