Lotus japonicus: 130710819
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Entry
130710819 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130710819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130710819
03009 Ribosome biogenesis [BR:
lja03009
]
130710819
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130710819
Spliceosome [BR:
lja03041
]
Complex A
U1 snRNP components
U1 related factors
130710819
Complex B
130710819
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Helicases
130710819
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
130710819
NCBI-ProteinID:
XP_057416173
LinkDB
All DBs
Position
4:53918260..53923320
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AA seq
609 aa
AA seq
DB search
MNPFDNRYSDSSSYRDRRSDVIGPMRPPVASRVGPVPYGAPYAAPVPSGFGPAAHANPNP
PFVPPSGGFSVGRGGGFGGRGGDRKYDTGRYSGGGGGRGRGGGSFRGGGRGGRGGGFGGR
HGGGSSKDDLNNISLPKQDFRNLVPFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQD
VPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAY
LLPALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKG
PQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQ
IRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNR
LIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSG
RSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVHRIGRTGRAGAKGTALTFFTHANA
KYARELIKILQDAGQVVSPALSVMARSAGSGPLGSGGSFRSRGRGGYGNRGSISGSNAIP
VGMKRPWPY
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccttcgacaatcgatactccgattcctcttcatatcgcgatcgtcgcagtgat
gtaattggacctatgcggccacccgttgccagccgcgtcggtccggttccctacggtgct
ccatatgcggcccctgtacccagcggtttcggacccgccgcacacgctaacccgaatccg
ccgtttgttcctccttctgggggattctctgttggccgaggcggtggatttggtggtaga
gggggtgataggaaatatgacacgggtcgttatagcggtggtggtggtggaagaggtcgt
ggcggtggtagttttaggggtggaggcagaggtgggagaggcggtgggtttggaggtaga
catggtggtgggtcttctaaggatgacttgaacaatatttcgctaccgaaacaagatttt
aggaatctggtcccttttgagaagaatttttacattgagagccctgcggtaagggctatg
tctgaacaagaagttatgcaataccgtgcaagcagggatattactgtccaagggcaggat
gtgccgagacctattcggtcgtttcatgaagctagtttccctggttactgccttgaggtc
tttgccagattgggttttgttgagcccactccaatccaggctcagggttggcccatggct
ctgacgggtagggatttgattggcattgctgagactggctcgggtaaaaccttggcgtat
ctgcttcctgcattagtgcatgtgaatgctcaacctcgattggttcaaggggatggtccc
attgtcttagttttggcaccaactagagagttagctgttcaaattcaacaagaagctatg
aaatttgggtcacgagcaaatattagaattacttgcatctatggcggtgcaccaaagggc
cctcaaattcgtgaccttcaaagaggcgttgagattgtaattgctacccctggtcgtcta
atcgatatgttggaagctcagcacacaaacctgcagagagtgacttaccttgtcttggat
gaagctgatcgaatgttggacatgggttttgaacctcagatacggaaaattgttagccag
attcgaccagataggcagacactatactggagcgctacatggccaagggaggttgaaact
cttgcaagacagtttctgcgcaacgcatataaggtaattattggttcaccagatctgaaa
gcaaatcattgtataaatcaagttgttgaagttgtaaccgacattgagaaatacaataga
ttgatcaaactgctgaaagaagtgatggatggtggccgaattctaatatttatggagacc
aaaaagggatgtgaccaagttacaagacaattgagaatggaaggatggccagcactatcc
atccatggtgataaaaaccaggctgaaagggactgggttttggctgaatttaaaagtggc
agaagtccaattatgactgccactgatgttgctgcacggggtcttgatgtgaaagacata
aaatttgtgatcaattatgattttccatcaagcctggaagattatgtccacagaattggt
cgaactggtcgtgcaggggctaaaggaaccgcactcacctttttcacccatgccaatgcc
aagtatgctagggagctaatcaagattttacaagatgctggtcaagttgtgagtcctgca
ctgtctgttatggctcgatctgctggttctggtccacttggatccggaggaagctttcgc
tcaagaggacgaggaggctatggcaataggggttcaatatcaggatccaatgccattcct
gttggtatgaaaaggccttggccgtattag
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