Lotus japonicus: 130710891
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Entry
130710891 CDS
T04348
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
lja
Lotus japonicus
Pathway
lja03020
RNA polymerase
lja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130710891
09124 Replication and repair
03420 Nucleotide excision repair
130710891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130710891
03400 DNA repair and recombination proteins [BR:
lja03400
]
130710891
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
130710891
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
130710891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Enterotoxin_b
Motif
Other DBs
NCBI-GeneID:
130710891
NCBI-ProteinID:
XP_057416261
LinkDB
All DBs
Position
4:10878858..10883107
Genome browser
AA seq
318 aa
AA seq
DB search
MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDV
TSKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
PAATVSFMYEPEIHINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYD
DEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSED
TVEADDQFGELGAHMRGG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgtttcctacgcgcgcatgccgcgagtgaaaatccgagaactcaaggacgac
atggcgaggttcgagcttcgcgacaccgacgccagcatcgccaacgcgctgcggcgcgtg
atgatatcggaggtgccgacgatagccatcgacctggtggaaatcgaggtgaactcgtcg
gtgctcaacgacgagttcatcgctcacaggctcggcttgattccgctcaccagcgagcga
gccatggccatgcgattctcacgtgactgcgacgcttgtgacggtgatggacagtgcgag
ttttgctccgtcgagtttcatcttagggttaagtgcatgactgatgagacgcttgatgtt
accagcaaggatctctatagttctgatcacaccgttgtccctgttgatttctctcctgat
acttcttctgattccgctgtgaacaaggggattataattgtcaagctgaggagaggacaa
gagctgaggctgagagcaatagctaggaagggcattggcaaagatcatgccaaatggtcg
cctgcagcaactgtttccttcatgtatgaaccagaaattcacatcaatgatgatttaatg
gagacattgacacttaaggagaaaaaagaatgggttgaaagttgtcctacccatgtgttt
gacattgatgcaaacacgcaaaaggtatatgttcatgaagctgaaaattactcgtatgat
gatgaggtgattaagaaagctgaagctatgggcaagcccgggcttgtagaaatcactgca
aagcaggatagcttcatctttatagttgaaactaccggagcagttaaagcttctcaatta
gtgctaaatgccattgaaattctcaagcagaagctggatgccgtgcggctatctgaagat
acggtggaggctgatgatcaatttggtgagctaggtgcacatatgcgaggaggatga
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integrated database retrieval system
