Lotus japonicus: 130713858
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Entry
130713858 CDS
T04348
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
lja
Lotus japonicus
Pathway
lja03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130713858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130713858
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
130713858
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
130713858
NCBI-ProteinID:
XP_057419658
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Position
4:1208545..1216062
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AA seq
565 aa
AA seq
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MSMDLLLKPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAEKKAKCIDCGATLTRLIREYN
VRASSGSDKNYFIGRFITGLPDFSKKKSAENKWCLQKDGLQTRQVTDALREKYKNKPWLL
EDETGQSQYQGHLEGAQSATYYLLMMERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKHADGYERWMMKAANNGAAAFGVKVEDKEISVYGGKGRKKTSEDDEGHVSDIGEED
EEEEAGRKTRLGLNKGGDDDDEEGPRGGDSDVDDDDDIEKGDDWEHEDIFTDDDEAVGNN
PEEREDLAPEVPAPPEIKQDEEEEEGEDNEEGGGLSKSGKELKKLLGRSSGLNESDAEDD
DDDEEMDDEVGVPLVSASKQKDALKEEPADNSPLKPGATTSKSSKGKRKINEEAKTSNGA
PPKKVKTENEPKLSVKDENGSAVKSNAPPKGVPPAPSSKAGSSTTASGPVSEEEIRAVLM
QNTPVTTQDLVAKFKARLRSPEDKKAFADILKRISKIQKTTSGASYVILRDRSALIHPSL
HRQTRRSAFEPRPSSLSVMSKAEDL
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggacctgttgctgaagccttcttgtagcggttgtggatcaaccaccgatctc
tatggaagcaattgcaagcacatgactctctgcttgacctgcggcaaaaccatggcggag
aagaaagccaaatgcattgattgtggcgcaaccctcactcgcttgattagggaatacaat
gttcgtgcaagttctggcagtgacaaaaactacttcattggacgattcataaccgggttg
cctgatttttccaagaagaaaagtgctgaaaacaagtggtgccttcagaaggatggactg
caaacccgccaagttaccgatgctttgcgggagaagtacaagaacaagccgtggctctta
gaggacgaaactggtcagtcccaataccaaggtcaccttgaaggggcacagtcagctaca
tattatctgcttatgatggaaaggaaggagtttgttgccattcctgctggttcttggtac
aactttaacaaggttgctcaatataaacaattgacattagaggaagcagaagagaaaatg
aagaacagaaagaaacacgcggacgggtatgaaagatggatgatgaaggctgcaaataat
ggggctgccgcatttggtgtgaaggttgaagacaaggagatcagtgtgtacggagggaaa
ggccgtaaaaaaactagtgaagatgatgaaggtcatgtctcagatattggagaggaggat
gaagaagaggaggcaggaagaaagactagacttggacttaataaaggaggtgacgatgat
gatgaagagggtccaagggggggagacagtgatgtagatgatgatgatgatattgagaag
ggcgatgactgggagcatgaagatattttcactgatgatgatgaagctgttggcaataat
cccgaggaaagggaagatttggctcctgaagttcctgctcctcctgaaatcaagcaggat
gaggaggaggaggagggtgaagataatgaggaagggggaggtttgagtaaatctgggaaa
gagctgaagaagctacttggacgttctagtggtctaaatgaatctgatgctgaggatgat
gacgatgatgaagagatggatgatgaggttggcgttcctcttgtgagtgcttcaaagcag
aaggatgcacttaaggaagaacctgctgacaatagccctttaaaacctggagctactact
tcaaagtcttcaaaagggaagagaaaaataaatgaggaagcaaaaacatctaatggtgca
ccaccaaagaaggtgaaaacagaaaatgaaccgaaattatctgtcaaagatgaaaatggg
tctgcagttaaaagtaatgctcctccaaaaggtgtaccgcctgcaccatcatcaaaagca
gggtcttccaccactgcttctggacctgtgagcgaggaagaaatcagggctgttttaatg
caaaacactccagtgacaacacaggatcttgttgctaaatttaaagcaagactaagatca
ccagaggataaaaaggcttttgctgatatcctgaagagaatctccaagatacagaagact
accagtggcgccagttatgttattttgagagataggagtgcactgattcatccctcttta
cacaggcaaacgaggagatcagcgttcgagcctaggcctagcagtctctcagtcatgtcc
aaagcagaagatctataa
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