Lotus japonicus: 130714652
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Entry
130714652 CDS
T04348
Name
(RefSeq) chaperonin 60 subunit alpha 2, chloroplastic isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130714652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130714652
03110 Chaperones and folding catalysts [BR:
lja03110
]
130714652
03029 Mitochondrial biogenesis [BR:
lja03029
]
130714652
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lja04147
]
130714652
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
130714652
Messenger RNA biogenesis [BR:
lja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
130714652
Chaperones and folding catalysts [BR:
lja03110
]
Heat shock proteins
HSP60 / Chaperonin
130714652
Mitochondrial biogenesis [BR:
lja03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
130714652
Exosome [BR:
lja04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
130714652
Exosomal proteins of other body fluids (saliva and urine)
130714652
Exosomal proteins of breast cancer cells
130714652
Exosomal proteins of colorectal cancer cells
130714652
Exosomal proteins of bladder cancer cells
130714652
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
130714652
NCBI-ProteinID:
XP_057420556
LinkDB
All DBs
Position
4:complement(10906758..10912945)
Genome browser
AA seq
589 aa
AA seq
DB search
MQTQAHTCLSSFFFFPPNRNPFTSSSSSSFRWNQMAIRVRKNPHFVVRAGAKKISFGKEC
REALLVGMDKLADAVSLTVGPKGRNVILSESGKLKVINDGVTIARSIELADAIENAGAML
IQEVASKMNDLAGDGTSTAIILARAMIKYGLLSVAFGANPISLRKGMEKTVKDLIKFLKT
RSVPVEGRDHIKAVASISAGNDEYVGNLIAEAIEKIGSDGVISIETSSTSETSVIIEKGM
KIDKGYMSPHFITNQEKSIVEFDNAKILVTDQKISNVKEIIPLLEKAMQLNAPLVIIAED
IAKQVLETLVVNKAQGLLRVAVVKCPGFGDAKKAILQDIALMTGGDFLAGDLGLTLDGAT
SDQLGNALKVTITSNATTIIADPSTKAEIQARILQIKKDLMGIDNANLSKKLSERIAKLS
GGIAVIKVGAHTELELEDRKLRIEDAKNATFAAINEGIVPGGGATYVHLLDLIPTIRNSM
EDRDEQIGADIVAKALLEPAKSIATNAGVDGDVVVQKIRIFDWRIGYNAMTGTYEDLLNA
GVADPSRVARCALQSAVSVAGVVLTTQAILVEKIKTPKPPVPMLPGINL
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacacaagctcatacatgtctctcttcattcttcttcttccctccgaatcgaaac
cctttcacttcatcttcatcctcttcttttcgttggaaccaaatggcaattagggttcgg
aaaaacccacactttgtggtgcgcgctggtgctaagaagatatcattcggtaaggaatgc
agagaggctttgctagtaggcatggataaactcgctgatgctgtctctcttactgtagga
cccaaaggccgtaatgttattctttctgaatctgggaagcttaaagtaattaatgacggt
gttacaattgcacgatccatagagcttgccgacgcaattgagaatgcaggtgccatgcta
attcaagaggttgcgagtaaaatgaatgatttggctggagatggtactagcactgcaatt
attttggctcgagccatgattaaatatgggctattatctgttgcatttggggctaatcct
atttcgttgaggaaagggatggaaaagactgtaaaagatttgatcaagttcttgaagacg
agaagcgttcctgttgaaggaagggatcacattaaagctgtagcatcaatatctgctgga
aatgatgagtatgttggcaatttgattgctgaagctatagagaagattggttctgatggg
gtgatctccattgagacatcttcaacatctgaaacctccgtcataattgaaaaagggatg
aagattgataagggttatatgtctcctcacttcatcacaaaccaggagaagtccattgtg
gagtttgacaatgctaaaattttggtaactgatcaaaagatttcaaatgtcaaagaaatc
attcccttgctggaaaaggctatgcagttgaatgctccactcgtaattattgcagaggat
atcgcaaaacaagtgttggaaacattagtagtgaacaaagcacaagggttactaagagtt
gcagttgtaaaatgtccaggatttggagatgcaaagaaagctatattgcaagatattgcg
cttatgacaggtggtgattttcttgctggagatttgggtctcactcttgatggcgccaca
tcagaccagcttggcaatgcactgaaagtaacaataaccagtaatgcaacaactataatt
gctgatcctagcactaaggctgaaattcaggctagaattttacagataaaaaaggatctt
atgggaatagataatgcgaacctttcgaaaaagctctcagagagaattgcaaaactctcg
ggtggtatagctgttataaaggtaggtgcacacactgagctggaacttgaagatagaaaa
cttagaatcgaggatgccaaaaatgctacatttgctgccataaatgaagggattgttcct
ggagggggggctacatatgtccatctgttggacttgatacctacaataaggaactccatg
gaagatcgagatgagcaaattggtgctgatattgtggcaaaggcactccttgaacctgca
aaatcaattgcaactaacgctggagttgatggagatgttgttgtccagaagattagaata
tttgattggagaattggatataatgcaatgactggcacatatgaagatcttttgaatgct
ggagtagctgatcctagtcgagttgcaagatgtgctcttcaaagtgcggtatctgttgcc
ggcgtggttctaacaactcaagctatattggtggaaaaaataaagacacccaagccacct
gtgcccatgctccctggtataaatctctaa
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