Lotus japonicus: 130714861
Help
Entry
130714861 CDS
T04348
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
lja
Lotus japonicus
Pathway
lja03030
DNA replication
lja03420
Nucleotide excision repair
lja03430
Mismatch repair
lja03440
Homologous recombination
lja03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130714861
03420 Nucleotide excision repair
130714861
03430 Mismatch repair
130714861
03440 Homologous recombination
130714861
03460 Fanconi anemia pathway
130714861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lja03000
]
130714861
03032 DNA replication proteins [BR:
lja03032
]
130714861
03400 DNA repair and recombination proteins [BR:
lja03400
]
130714861
Transcription factors [BR:
lja03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130714861
DNA replication proteins [BR:
lja03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130714861
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130714861
MMR (mismatch excision repair)
130714861
DSBR (double strand breaks repair)
HR (homologous recombination)
130714861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
130714861
NCBI-ProteinID:
XP_057420814
LinkDB
All DBs
Position
4:70535102..70538272
Genome browser
AA seq
624 aa
AA seq
DB search
MAVNLTANAIPAIVSGDLNLKPLLQVLDIKLISNSKQQERYRILLSDAVSSQQAMLATQL
NDQLRAGLVKRGSIVQLIEYICSPIQNRKIIVVLNMETIISDYEIIGNPKLFVETDFPNQ
EALPNNKMQNPSRSNSYHLPAQNASCNMQNFKPTVQPPYQPPPFYKGHGAIVRNEAPARV
IPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDADGGEIRVTCFNTAVD
RFYDVIEVGRVYLISRGNLKPAQKNFNHLKNEWEILLDLSSAVELCPDEDGSIPKQQFSF
RSISDIENADSNSILDVIGVVISVKPSVPILRKNGMETQRRILNLKDCSGRSVELTLWGE
FCNREGQMLQEMMDAGFFPTLAVKAGKVNDFSGKSIGTISSTQLFINPDFSEAHSLREWY
DRVGKDSASLSISKDIIPGGPKNDVRKTVSQIKDEGLGRSEKPDWMTLRATISFIKTDTF
CYTACPLMIGDRQCNKKVTRSGNRWQCDRCNQEFDECDYRYLLQAQILDHTGITWVTAFQ
ETGEEIMGYPAKELYMLKYEQQDDEKFAGIIKSRLFNQFVFRLKIKEELYGDEQRVKVTV
MKAGEVSYSSESGYMLDLISKFKV
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaatctgacggcaaatgcaattccggcgattgtttccggcgacctgaacttg
aagccgctgttgcaggttctcgatatcaagttgatttccaacagcaagcagcaggagcgg
taccgcattctgctttccgacgccgtttcctctcagcaagccatgctcgccactcagctc
aacgatcaactccgagccggactagtcaagagaggttcaatcgttcaactgatcgagtat
atttgcagtcctattcagaatcgcaagataatcgtggtgctcaacatggaaactataata
tcagattatgagatcattggaaatccaaaattatttgtggaaactgatttcccaaatcag
gaagcattgcctaataacaaaatgcagaacccatccaggagtaacagttatcatctgcct
gctcaaaatgcaagttgtaatatgcagaatttcaagcctactgttcaacctccataccaa
ccaccaccattttacaaaggtcatggtgcgattgtgagaaatgaggccccagcacgtgtt
attccaatagctgctttaaacccttatcaaggtcggtgggctatcaaagcaagggtaact
gcaaaaggggatctgcgccgctataataatgctaagggagatggaaaagtcttctcattt
gatctccttgacgctgatggaggtgaaatacgagtaacttgctttaacacggctgttgat
cgtttctatgatgtaatagaggttggtagagtttacttgatatccagaggtaacttgaaa
cctgcacagaagaacttcaaccatttgaagaatgaatgggaaatacttttggatttgtca
tcagctgttgaactttgtccagatgaagatggttctatacctaaacagcaattctccttt
aggtctatcagtgatattgagaatgctgacagcaactccatacttgatgtcattggggtt
gtgatatctgtgaaaccatcagttcccatcttgaggaagaatggaatggaaactcagaga
agaattttgaatctaaaggactgttctggaaggagtgttgagctaaccctttggggtgag
ttttgcaacagggaagggcagatgttgcaagagatgatggatgctggctttttccccact
ctggcagtcaaagctgggaaagtcaatgacttcagtgggaaatctatagggactatttct
tccacacagcttttcataaatccagatttctctgaggcacatagcttaagagagtggtat
gatcgagtgggaaaagattctgcttccctgtcaatttctaaggacattatacctggagga
cctaagaatgatgtacgtaaaactgtatctcagatcaaggatgaaggacttgggcggtca
gaaaagcctgattggatgacactgagggcaacaatatctttcatcaagacagatacattt
tgttacacagcttgtcctttgatgattggagatcgacagtgcaacaagaaagtgactaga
tcaggaaacagatggcaatgtgataggtgcaaccaagagtttgatgaatgtgactaccgc
tatcttctccaagctcaaattctggatcatactggaataacctgggtaactgctttccag
gaaacaggggaagagattatgggttaccctgcaaaggagctgtacatgttgaagtatgaa
cagcaggatgatgagaagtttgctggaataatcaagagtagactcttcaaccaatttgtt
ttcaggctgaaaatcaaagaggaattgtatggtgatgaacagagggtgaaggtcacagta
atgaaggcaggtgaggtgagttactcttcagagagtggttacatgcttgatttgatttca
aagttcaaagtttaa
DBGET
integrated database retrieval system
