Lotus japonicus: 130715281
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Entry
130715281 CDS
T04348
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
lja
Lotus japonicus
Pathway
lja03030
DNA replication
lja03420
Nucleotide excision repair
lja03430
Mismatch repair
lja03440
Homologous recombination
lja03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130715281
03420 Nucleotide excision repair
130715281
03430 Mismatch repair
130715281
03440 Homologous recombination
130715281
03460 Fanconi anemia pathway
130715281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lja03000
]
130715281
03032 DNA replication proteins [BR:
lja03032
]
130715281
03400 DNA repair and recombination proteins [BR:
lja03400
]
130715281
Transcription factors [BR:
lja03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130715281
DNA replication proteins [BR:
lja03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130715281
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130715281
MMR (mismatch excision repair)
130715281
DSBR (double strand breaks repair)
HR (homologous recombination)
130715281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
C1_1
Motif
Other DBs
NCBI-GeneID:
130715281
NCBI-ProteinID:
XP_057421342
LinkDB
All DBs
Position
4:60909107..60912447
Genome browser
AA seq
621 aa
AA seq
DB search
MAKSITPNAISTLIANPSPDSSSDLPELIVQVLDLKQSGMNRYMFAANDGKLKLKAILPS
SMYSEVLSGNIQNLGLIRILDYTVNDIPNKPEKYLIVTKCEAVSPALEMEIKTEQTAAGI
VLKPREDGGVKSEAAAGIVLKPKQEMVTKSAAQIVHEQHGNVAPAARMAMTRRVRPLVSL
NPYQANWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDKF
VLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVANEAVFVPETKFNFVQIDQL
GPFVNKNELVDVVGVVQNVSASTSIRRKINNETIPKRDITIADETKKTVVVSLWNDLATN
IGQELLDMADKSPVVAIKALRVGDFQGVSLSTISKSLVLINPDIPEAKRLKCWYDAEGKD
APLASVGSGSSATSPNGARSVYADRVPLSHITTNTSLGQDKPVFFSVRGHISFIKPDQTM
SYRACKTCNKKVTESFGAGYWCEACQKNDEQCSLRYIMVVKVSDASGEAYISVFNDEAEK
IVGCSADELDNLKQQEGEDNPYQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITARAVVP
VDFAAESRLLLEEISKMKAAQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatccatcaccccaaacgccatctccaccttgatcgcaaacccctcccctgac
tcctcctcagatctccccgaactcattgtccaagtcctcgatctcaaacaaagcggcatg
aacagatacatgtttgctgcgaacgatggaaaattgaagctgaaggcgattcttccttcc
agcatgtactctgaggttctctctgggaatattcagaacttagggttgattcgcatcctt
gattacactgtcaatgatatacccaataagcctgagaaataccttattgtgaccaagtgt
gaagcggtttctcctgcgcttgaaatggagatcaagactgagcaaaccgctgctggtatt
gttttgaagcccagggaggacggtggagtcaagagcgaagctgctgctgggattgttctg
aagccgaagcaggaaatggtgacgaaatcggctgctcagattgtacacgagcaacatgga
aatgtggctcctgctgcacgaatggcgatgacacgcagggtgcgtcctcttgtttctttg
aatccttatcaggctaattggacgattaaggtcagtgttaccagcaaagggaacatgcgt
acatataagaatgctagaggggaaggttgtgtcttcaatgttgagttgacagatgaagaa
ggtactcaaattcaagcaacaatgttcaatgatgctgcgaggaaattttatgacaaattt
gttttgggaaaggtttactacatttctaagggaactttgaaagttgctaacaaacagttc
aaaactgttcaaaatgattatgaaatgactctgaatgagaactctgaggtagaagaggtg
gccaatgaagcggtttttgttcctgaaactaaattcaactttgtccagattgatcagctg
ggtccttttgtcaataagaatgaacttgttgatgttgttggagttgttcagaatgtgtct
gcatcaacaagcattcgtcggaagatcaataatgagactattcctaagcgtgatatcact
attgctgatgaaacgaagaagacagtagttgtgtctttgtggaatgatcttgcaactaac
ataggacaagagttgctggacatggctgataaatctccggtagttgcaatcaaagccctc
agggttggggactttcaaggtgtttctttgtcaactataagcaaaagtctggttctgata
aatccagacatacctgaagcaaagagactaaaatgctggtatgatgctgaaggtaaggat
gctccactggcttctgttggctctggttcaagtgcaacatcccccaatggagctagatcg
gtgtatgctgatcgggttccactctctcacataaccactaacacatccctggggcaggac
aagcctgtgtttttcagtgttagagggcatataagtttcataaagccagatcagacaatg
tcgtatcgggcctgcaagacttgcaataagaaagttactgaaagctttggtgctgggtac
tggtgtgaagcttgccagaaaaatgatgaacaatgcagtttaaggtatatcatggttgta
aaagtttctgatgcaagtggtgaggcttatatctcagtctttaatgatgaagctgagaag
attgttgggtgctctgctgatgagctagacaaccttaagcaacaggagggagaagacaat
ccttatcagttgaaattgaaacaagctacctgggttccacacctattccgagtcagtgtt
tctcagaatgagtataacaacgagaagaggcaaaggataacagcacgggctgttgttcct
gttgactttgctgcggagtcaagactcctcttggaagagatatcaaaaatgaaagctgca
caataa
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