Lotus japonicus: 130715305
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Entry
130715305 CDS
T04348
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
lja
Lotus japonicus
Pathway
lja03030
DNA replication
lja03410
Base excision repair
lja03420
Nucleotide excision repair
lja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130715305
03410 Base excision repair
130715305
03420 Nucleotide excision repair
130715305
03430 Mismatch repair
130715305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lja03032
]
130715305
03036 Chromosome and associated proteins [BR:
lja03036
]
130715305
03400 DNA repair and recombination proteins [BR:
lja03400
]
130715305
DNA replication proteins [BR:
lja03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130715305
DNA Replication Termination Factors
ELG1-RFC complex
130715305
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
130715305
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130715305
Check point factors
HRAD17(Rad24)-RFC complex
130715305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
Mg_chelatase
AAA_22
Rad17
AAA_16
Viral_helicase1
RCF1-5-like_lid
RuvB_N
AAA_11
nSTAND3
AAA_19
AAA_assoc_2
AAA_5
AAA_28
AAA_30
DNA_pol3_gamma3
DNAX_ATPase_lid
RNA_helicase
AAA_25
AAA_24
AAA_18
ABC_tran
MeaB
IstB_IS21
NTPase_1
bpMoxR
KTI12
AAA_7
NPHP3_N
DO-GTPase1
Motif
Other DBs
NCBI-GeneID:
130715305
NCBI-ProteinID:
XP_057421368
LinkDB
All DBs
Position
4:52075655..52079630
Genome browser
AA seq
335 aa
AA seq
DB search
MASSSSTTTNTTVGYDVPWVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPG
TGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVI
LDEADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDHEIL
GRLMIVVKAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPH
PLHVKNMVRNVIEGNFDEACTGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYMKLEFMKE
TGFAHMRICDGVGSYLQLCGLLAKLFLVRETAKAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcatcctcatcgtcaaccaccaccaacaccaccgtcggctacgacgtcccatgggtg
gagaagtaccgaccctccaaggtcgccgacatcgtcggcaaccaagacgccgtctctcgc
ctccaagtcatcgctcgcgacggcaacatgcccaacctcattctctccggtcctcccggc
accggcaaaaccaccagcattctcgccctcgcacatgagcttctcggtcccaattgcaaa
gaagcagttcttgaactcaatgcatcagatgatagaggaatagatgttgtgaggaacaag
atcaagatgtttgctcaaaagaaagtaacgctgcctccgggccgacacaagatagttata
ctggatgaagctgacagcatgacaaccggagcacagcaagccttgagaagaacaattgag
atatattccaatactactcgtttcgctcttgcttgtaacacatcggctaagattattgag
ccgattcagagtagatgtgccattgtgcggttttcgcgattatctgatcatgagatactt
ggtcgcctcatgattgtggttaaagctgagaaggttccctatgttcctgaaggacttgag
gccatcatcttcactgctgatggtgatatgaggcaggcattgaataacttgcaagcaaca
tacagcgggttccagtttgtcaaccaagcaaatgtttttaaggtttgtgatcagccgcat
ccactgcatgtgaagaatatggtgcgcaatgtgattgaagggaattttgatgaggcttgt
acggggctcaaacaactgtatgacttaggatattctcccacagatatcatcaccacactc
tttcgtataataaagaattatgatatggcagagtacatgaaactagaattcatgaaggaa
actggatttgctcatatgagaatatgtgatggagttggttcttatcttcagctgtgtggc
ctattggctaagctttttctagttcgtgaaactgctaaagctgcatga
DBGET
integrated database retrieval system