KEGG   Lotus japonicus: 130715305
Entry
130715305         CDS       T04348                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
lja  Lotus japonicus
Pathway
lja03030  DNA replication
lja03410  Base excision repair
lja03420  Nucleotide excision repair
lja03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    130715305
   03410 Base excision repair
    130715305
   03420 Nucleotide excision repair
    130715305
   03430 Mismatch repair
    130715305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lja03032]
    130715305
   03036 Chromosome and associated proteins [BR:lja03036]
    130715305
   03400 DNA repair and recombination proteins [BR:lja03400]
    130715305
DNA replication proteins [BR:lja03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    130715305
  DNA Replication Termination Factors
   ELG1-RFC complex
    130715305
Chromosome and associated proteins [BR:lja03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    130715305
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     130715305
  Check point factors
   HRAD17(Rad24)-RFC complex
    130715305
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 Mg_chelatase AAA_22 Rad17 AAA_16 Viral_helicase1 RCF1-5-like_lid RuvB_N AAA_11 nSTAND3 AAA_19 AAA_assoc_2 AAA_5 AAA_28 AAA_30 DNA_pol3_gamma3 DNAX_ATPase_lid RNA_helicase AAA_25 AAA_24 AAA_18 ABC_tran MeaB IstB_IS21 NTPase_1 bpMoxR KTI12 AAA_7 NPHP3_N DO-GTPase1
Other DBs
NCBI-GeneID: 130715305
NCBI-ProteinID: XP_057421368
LinkDB
Position
4:52075655..52079630
AA seq 335 aa
MASSSSTTTNTTVGYDVPWVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPG
TGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVI
LDEADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDHEIL
GRLMIVVKAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPH
PLHVKNMVRNVIEGNFDEACTGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYMKLEFMKE
TGFAHMRICDGVGSYLQLCGLLAKLFLVRETAKAA
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcatcctcatcgtcaaccaccaccaacaccaccgtcggctacgacgtcccatgggtg
gagaagtaccgaccctccaaggtcgccgacatcgtcggcaaccaagacgccgtctctcgc
ctccaagtcatcgctcgcgacggcaacatgcccaacctcattctctccggtcctcccggc
accggcaaaaccaccagcattctcgccctcgcacatgagcttctcggtcccaattgcaaa
gaagcagttcttgaactcaatgcatcagatgatagaggaatagatgttgtgaggaacaag
atcaagatgtttgctcaaaagaaagtaacgctgcctccgggccgacacaagatagttata
ctggatgaagctgacagcatgacaaccggagcacagcaagccttgagaagaacaattgag
atatattccaatactactcgtttcgctcttgcttgtaacacatcggctaagattattgag
ccgattcagagtagatgtgccattgtgcggttttcgcgattatctgatcatgagatactt
ggtcgcctcatgattgtggttaaagctgagaaggttccctatgttcctgaaggacttgag
gccatcatcttcactgctgatggtgatatgaggcaggcattgaataacttgcaagcaaca
tacagcgggttccagtttgtcaaccaagcaaatgtttttaaggtttgtgatcagccgcat
ccactgcatgtgaagaatatggtgcgcaatgtgattgaagggaattttgatgaggcttgt
acggggctcaaacaactgtatgacttaggatattctcccacagatatcatcaccacactc
tttcgtataataaagaattatgatatggcagagtacatgaaactagaattcatgaaggaa
actggatttgctcatatgagaatatgtgatggagttggttcttatcttcagctgtgtggc
ctattggctaagctttttctagttcgtgaaactgctaaagctgcatga

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