Lotus japonicus: 130716259
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Entry
130716259 CDS
T04348
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130716259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130716259
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
130716259
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Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
130716259
NCBI-ProteinID:
XP_057422448
LinkDB
All DBs
Position
4:20528848..20555185
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AA seq
935 aa
AA seq
DB search
MLHNKSFVKKTKGGKVLKQVREHYLRDDIYCGAPFCTACDSSGARLGASASTILVLDTNV
VLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRLRAICSNSMRKFFVFSNEYHRDTY
VKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDRENKRKASEEGICAETVESY
VKSLDRTDLLDLLVRPTSEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAVELLPQDQWHEEKSLSIRGE
EDEDDDEDVHLAPNSADDAPRTIPQQGSTGGINAVCNRPSGVVVGIIKRNWHSYCGSLEP
MPLPAGSGGVAYALFVSKDRRIPKIRLQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVR
TIGDIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWSVSSEDFSKPIRQDLRHLRVF
SVDPPGCTDIDDALHCYALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERR
IDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISSRYTKSVIKSCAALSYVEAQAR
MDDSRLMDPVTTDLRNMNSLAKKMRLRRIDNGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAQQILRSFPLCSLLRRHPIPTREMLEPFLRIATAVGLHLDVS
SSKALADSLDHAVGDDPYFNKLIRIMATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHF
TSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLTSIADNLNYRHRNAQMAGRASIELH
TLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTTRAEKGNGDWYVDEQEQKIK
KMDGSVSYSILQSVQIHMEVVEPQPNRPKLQLTLI
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgcttcacaacaagtcctttgttaagaaaaccaaaggtggcaaagttttgaagcaagta
agggagcactatttgcgagatgatatatactgcggtgctccgttttgcacggcttgtgat
tcctctggtgctcgcctcggtgcttcggcttccacgattcttgttctcgacaccaatgtt
gttctcaaccagattgatttgctggagaatccagccattgatgatgttgttgtgttgtct
attgtgctggaagaggttaagaacaagaatatgtctgtgtataaccggttaagagctatc
tgtagcaattccatgaggaaattctttgttttttccaatgaataccacagggatacgtat
gttaaggaaatgagtggggagactaaaaatgataggaatgatagagctatccgggtggct
actcagtggtatcagaatcatcttggtggtgcagtgaaggttttgcttataactaatgat
agagagaacaaacggaaagctagtgaagaggggatttgtgcagaaacagttgagtcatat
gtcaaatctttggaccgaaccgatctacttgacttactggtgcggcctacgtctgaagat
gtagacatggaagaggttgaagatctcagaccatccaagaggaaagtaatctattcggag
cataagccgatgtcagaaattacttccggtttgcatcgtggaatctatcatcaagggaaa
cttcgtgtaaaccgttacaatccatttgaagcatatgttggcagtgagagcattggtgat
gaaataatcatttatgggcgctcaaatatgaatcgagcttttgatggtgatattgtggca
gttgaacttctgccacaggaccagtggcatgaagaaaagtctctatctattcgcggtgaa
gaagatgaggatgacgacgaagatgttcatctagctccaaatagtgctgatgatgcaccg
agaactattccccaacaaggttctactggaggaatcaatgcagtgtgcaatcggccatct
ggtgttgtagtgggcattataaagagaaactggcattcgtattgtggatctctggagcca
atgcctctgcctgcagggagtggtggtgttgcttatgccttgtttgtttccaaagatcgt
agaattcccaaaattcgactccaaacccgccaacttgaaaacctgttggataagaggatt
attgtggcagttgattcttgggatcgccaatctcgttatccatcaggccattatgtgcga
actataggagatatcggtgatagagatactgagagcgaggtggtattgatagaaaatgat
atcaacacaagaccgttctcttcacaagtgctagcatgcttgccaccattgccatggtct
gtctcttctgaggatttctccaaaccaattaggcaggatttgcgtcatctacgtgtcttc
agtgtggaccctccaggctgcacggatattgatgatgcactccactgttatgctcttcca
aatggaaactttgaagttggagttcatattgctgatgtgacaaattttgtacatcctgga
actcctcttgatgatgaagcttctcagaggggaacatcggtctaccttgttgagcgacgg
atagacatgcttccgaaacctcttacagaggacatatgttctcttcggtctgatgtggaa
aggctagcattctctgtcatatgggaaatgacaccagaagcagacattatttccagcaga
tacacaaaaagtgtcataaaatcctgtgcagcactgtcttatgttgaagcacaagcgagg
atggatgatagtcgattgatggatccggtaactacagatttgaggaatatgaatagttta
gccaagaaaatgagattaagacgtattgacaacggagctttgacacttgcatctgctgaa
gttaaatttcaaattgacacagagactcatgacccccttgatattggcatgtaccaaatc
cgagaagccaaccaaatggtggaggagtttatgcttgctgctaatgtttctgttgcacaa
caaattcttagaagttttcctttgtgctcattattaaggcgtcatccaattccaactaga
gagatgcttgaaccctttctaagaattgctactgcggttggcctgcacttggatgtttca
tcatcgaaagcattggctgattcccttgaccatgctgtgggtgatgatccatacttcaac
aagttaatccgtattatggcaactagatgcatgactcaggcagtttatttctgtagtggg
gatcttagccctccagaatatcatcattatggacttgcagctcctttgtacacccatttc
acttcacctataagaagatatgcggatgtcattgtgcacaggctacttgctgcttcttta
ggaatatccaagttaccatctgtatttcaggacaggctccagctgactagtattgcagac
aatttaaattatcggcacaggaatgctcaaatggctgggagggcctctatagagctgcac
acacttatttatttccgtaaaaggccaacagatacggaggcaaggatagtgaaaataaga
tctaatggattttttgtgtttgttcccaaatacggcatagaaggacctgtatatttgaca
acacgagctgaaaagggaaatggagactggtatgttgatgagcaagagcagaagattaaa
aagatggatggaagcgtttcatatagcattttgcagtcagtccaaattcacatggaggtt
gtggagccccagcctaacaggccaaaacttcagcttactctcatctag
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