Lotus japonicus: 130716586
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Entry
130716586 CDS
T04348
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130716586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130716586
Spliceosome [BR:
lja03041
]
Complex A
U1 snRNP components
U1 related factors
130716586
Complex B
130716586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
FF_RHG35_4th
WW_TCERG1
SMODS
Motif
Other DBs
NCBI-GeneID:
130716586
NCBI-ProteinID:
XP_057422539
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All DBs
Position
5:63721738..63737420
Genome browser
AA seq
1011 aa
AA seq
DB search
MSNNPHFPGLQPLRPPTGPVDSQRNFGPPMPVQFRTVVPAQQPPQFVPMPSQHYQPLGPG
VPMMNVGMHPQNPQPQFSQPIQPLPPRPSQQLPLPSQPIPLPVARPNMQMSSESMIPLPD
SQAPNGYAPGLGGPGMPLSSSYTFAPSSYGQVQTNFSSASQYQTIPQIQAHTGTSSQSIT
SGTILQSSGEQPSATINQPKLAKVGSSDWIEHTSATGRKFYYNKRTKSSSWEKPFELMTP
IERVDASTNWKEFTSPDGRKYYYNKVTKESKWLIPEELKLAREQGEKAIVNGTRPEALLN
SHTQPSATPSVTEATPIAENSSLTGQGEPSSPVSVAPVVTTPASNLQSELTSGSSASPSA
ITVSGTKVDELDAPVNTVTPSDASAGSDRAFDTEINTAMPTTAMNDANNISAQDTVGGVS
AEDKEDGKNDSIGEKANGTTSEAKAAEPEPLVYANKMEAKDAFKALLESVNVGSDWTWDR
AMRLIINDKRYGALKTLGDRKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKIMLEESTEL
TSSTRWSKAIAIFENDERFKAVERDRDRKDMFDSFLEELIIKDRTRVQEERKRSITEYRK
FLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEE
LRKAERKNREDFRKSMEEHIASGILTAKTQWRDYYLKVKDLHAYQAVASNTSGSTPKDLF
EDVAEELEKQYHEEKSRVKDALKLAKITLLSTWTFEDFQSALSKDISSPPKSEFNLKLVF
DELQERAREKEEKEAKKRKRLADDFFHILYSTKDITASSKWEDSRPLVEDSQEFRSIGDE
SLCKDIFEEYITKLKEEAKEIDRKRKEERAKKDKDREERERKKSKHRKEKEGGRERGKEE
THRKDKTDSDSLDATETQPSNENKRSGGDNRKQRKQHQSPEDTSHEVDKERTKKSHGHSS
DRKKSRRHASGHESDEGRHKRRRRDHRSDSHREGDYGDLEDGEFGDVADRW
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaataatccgcatttcccgggtttacagcctcttcggcctcctactggtccagtg
gattcccagcgcaattttggtccaccgatgcctgttcaattccgcactgttgttcctgct
caacagccgccgcaattcgttcccatgccttctcaacattatcaacctcttggtcccggt
gttcccatgatgaatgttggaatgcatcctcagaatccacaaccccaattttctcaacca
attcaaccgttacccccaagacctagtcagcagctaccactcccgtcacagccaattcca
ttgccagttgctcggccaaacatgcaaatgtcatctgaatcaatgatacctctgcctgat
tctcaagccccaaatggctacgcaccaggtttaggtggccccggaatgccactctcctca
tcttatacgtttgcgccatcttcttatggtcaagtgcaaactaattttagttctgccagc
caataccaaacaattcctcaaatccaagctcatactggcacttcatcccagagcattacc
tctggcacaatcctccagagcagtggcgaacaaccttcagctaccattaaccagccaaaa
cttgcaaaagttggctcttcagattggattgagcatacttctgccactggaagaaaattt
tactataataaaaggactaagtcatccagctgggagaagccttttgaattaatgacacct
attgagagggtagatgcatcaacaaactggaaggagtttactagtcctgatggaagaaag
tattactacaacaaggtcactaaagaatcaaagtggttgattcctgaggaactgaagttg
gcccgtgagcaaggtgaaaaggcaattgtcaatggaacacgccctgaagctttactgaat
tctcatactcaaccctctgcaactccttctgtgactgaagctacaccaattgcagagaat
tcatctctaactggtcaaggcgaaccatctagtcctgtctcagttgctccggttgttact
acacctgcaagtaatctgcaatctgagttgacttctggatcatctgcctctccttctgca
atcactgtatctggaacaaaagttgatgaacttgatgcacctgtaaatactgtcactcca
tcagatgctagtgctggaagtgatagagcttttgatactgaaattaatactgctatgcct
acaacagcaatgaatgatgccaacaatatttcagctcaagatactgtgggtggagtttca
gcagaagacaaagaagatggaaaaaatgattcaattggagagaaagctaatggtacgacc
tcagaagcaaaggcagctgagccagaacccttagtctatgcgaataagatggaagctaaa
gatgcattcaaagcgctcttggagtctgttaatgttggatctgactggacttgggatcgg
gctatgcgattgataattaatgacaaaaggtatggtgcgttaaaaacccttggagacagg
aagcaagctttcaatgagtacttaaatcagagaaaaaaacaggaagcggaagaaaagcgt
atgaaacagaaaaaagcgcgggaggattttaaaataatgttagaagaatccacagaattg
acttcatccaccagatggagcaaagcaattgctatatttgaaaatgatgaacgtttcaag
gctgttgaacgtgacagagatcgcaaggatatgtttgatagcttcctggaagaacttata
atcaaggatcgaacaagggtacaggaggaacgaaaacggagtataacggaatacaggaag
tttttagaatcttgtgactttattaaggctagtacacagtggcgtaaagttcaagaccgc
ttagaggctgatgaaagatgttctcgtctcgagaaaattgatcgtttggaaatattccaa
gattatttgcgtgatctagagaaggaagaggaagagcagaagaagatacagaaagaggaa
ctgagaaaggcagaacgtaaaaaccgggaggatttccgcaaatcgatggaagagcatatt
gcttcaggcattcttacagcaaaaactcaatggcgtgattattatttaaaggtgaaagat
ctacatgcttatcaagctgtggcatcaaacacttcagggtcaactccaaaagacttattt
gaagatgttgctgaagaactagagaaacaatatcatgaggaaaagagtcgagtaaaagat
gcattgaagttggcaaagatcactttgttgtcaacttggacttttgaagacttccaatca
gctttatcaaaagacattagttctccgcctaaatctgagttcaacttaaagctagtgttt
gatgagctacaagaacgggctagggagaaggaggagaaggaagctaagaagcgtaaacgt
cttgcagatgatttttttcacatactatattctaccaaggacattactgcgtcttcaaag
tgggaggactctagaccacttgttgaagatagccaagagttcagatctattggagatgag
agcctttgcaaggacatatttgaggagtacattacgaaactgaaagaagaggcaaaagag
attgaccggaaacggaaagaggaaagggcaaagaaggataaagatagggaggaaagagaa
aggaaaaaatcgaagcacagaaaagaaaaagagggaggacgtgaacgtgggaaagaggag
acacataggaaggataaaactgacagcgacagtttggatgcaactgaaacccaaccctcc
aatgaaaacaaaaggtccggaggtgataatagaaaacaacggaagcagcatcaaagtcct
gaggatacttctcacgaagtggataaagagaggactaaaaaatctcatggtcatagtagc
gaccgcaagaaatcaagacgtcatgcatctggtcatgaatcagatgaaggccggcacaaa
aggcgcaggagagaccaccgcagcgattctcatagagagggtgattatggagatctcgaa
gatggggaatttggcgatgtcgcagatagatggtaa
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